PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN539060.1_FGP011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 250aa MW: 27071.7 Da PI: 6.6903 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 79.1 | 5.4e-25 | 127 | 189 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+eL++eN+aL++el++lkk ++ +++e+ KN539060.1_FGP011 127 ERELKRERRKQSNRESARRSRLRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAEN 189 89*********************************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 9.0E-7 | 8 | 104 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-18 | 126 | 186 | No hit | No description |
Pfam | PF00170 | 2.2E-22 | 127 | 189 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.4E-22 | 127 | 191 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.553 | 129 | 192 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.75E-12 | 130 | 185 | No hit | No description |
CDD | cd14702 | 4.41E-20 | 132 | 182 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 134 | 149 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDQLERATGD SGSEESSDTR DDDTDHKDSS APKKRKSGNT SAEGEPSQAT LVPYAAVESP 60 YPLKGRSASK LPVSAPGRAA LPNATPNLNI GIDLWSTPPA LAVPAGQGEA SPGLALARRD 120 GVAHLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK VAELTTENSA LRSELDQLKK 180 ACEDMEAENT RLMGDKAQYK GPTVTTTLGM SIDSSKTQPH DDEGQLHKNT NNNSNGNYVG 240 GSHKPEANSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 149 | RRSRLRK |
2 | 143 | 150 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN539060.1_FGP011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK289179 | 0.0 | AK289179.1 Oryza sativa Japonica Group cDNA, clone: J100028J17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644731.1 | 1e-175 | DNA-binding protein EMBP-1 | ||||
Swissprot | P25032 | 8e-55 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | B9FW50 | 1e-174 | B9FW50_ORYSJ; Uncharacterized protein | ||||
STRING | OBART07G07070.1 | 1e-175 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-24 | basic region/leucine zipper transcription factor 16 |