PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539050.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 583aa    MW: 65570.9 Da    PI: 9.1985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539050.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.61.7e-1062120155
            G2-like   1 kprlrWtpeLHerFveav.eqLGGsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55 
                        kprl+Wt +  ++F ea  e+L  s k +P ++l   + m+  gLtl++v S LQkYRl
  KN539050.1_FGP009  62 KPRLVWTWQQNAKFSEAYkEELSRSGKVVPTKLLkrlKSMNETGLTLHNVSSRLQKYRL 120
                        79***************8357*********999722257999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-759124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-1260124IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-762120IPR006447Myb domain, plants
Gene3DG3DSA:3.30.420.101.5E-13426554IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.28E-16426553IPR012337Ribonuclease H-like domain
CDDcd062222.68E-20428550No hitNo description
PfamPF134561.1E-18430552No hitNo description
PROSITE profilePS5087910.478448554IPR002156Ribonuclease H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLPAASLHGD SNGSTTTASS SSGNRATNRR NQCWETTAKQ VSTVQGEAVQ EQPAAAKNQP  60
RKPRLVWTWQ QNAKFSEAYK EELSRSGKVV PTKLLKRLKS MNETGLTLHN VSSRLQKYRL  120
SLKRQTSHVD QSTSTDSTTA SSIQTKQTPA LLQQIIHPGA LHTQLAPDVH QVITNLPQQH  180
IRHYQPNQIL SQLYNDEPAN MNHQPVQILP QAHCNEPINM HMHHQQVERL SEPHSSEPIY  240
KEYNNLAQRF TQVNYHGHSS IHDHHYANII KKLLPPNVMQ PCDLINALPQ QPAAATACYM  300
QSNTQTVSSA LLVKGMQNHP PDHHIQAFGV LDMGTAQYMG QHLNMYTAEG NWRGTSTPQN  360
MRPLSEVHRH VSEPPPSYFS NNTKANGRSQ EDLDVVLQQQ LVINDSLVIE YPMENIRRAD  420
NIPGGIRCYV DAAWDNGRTG LGIFFHDPQS HSAIFIQASS DKAQSALQAE LTALYLALQI  480
AMFLNFLGVT FLTDNATIAD TAKKRRFMEE PGHWSLRPFW SQIISSVPTH LIQVRWIPRE  540
LNKMADKLAK DAKSSSRRDL VHSCQNIAHL AYPQRGCDAK HLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539050.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453210.0AC145321.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0094P07, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FKS80.0A0A0E0FKS8_ORYNI; Uncharacterized protein
STRINGONIVA01G15460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1985788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.21e-07response regulator 1