PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539009.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 305aa    MW: 31775.4 Da    PI: 5.0842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539009.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-3080138259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+
  KN539009.1_FGP008  80 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 138
                        69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.20474140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-3176138IPR003657WRKY domain
SuperFamilySSF1182907.72E-2677138IPR003657WRKY domain
SMARTSM007742.9E-3679139IPR003657WRKY domain
PfamPF031063.4E-2681137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSGGGGREQM KGREDVAAAD CCPGSPVSPS PAAAQRSAAG AAASPSGRSR RSAQKRVVTV  60
PLADVTGPRP KGVGEGNTPT DSWAWRKYGQ KPIKGSPFPR AYYRCSSSKG CPARKQVERS  120
RNDPDTVIVT YSFEHNHSAT VPRAQNRQAA PQKPKAQACS PPEPVVEVEP EETHQYGVTA  180
GPVTGGGGAA AIEVRDEFRW LYDVVSVPAS STSPSDIDAA DEMQLYDQPM FFGGAVVGTA  240
ALLPDEFGDV GGLGGEGLGE EEALFEGLGE LPECAMVFRR RAGDGLAMGA GGVKIEPPAE  300
STAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17811371671WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539009.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097700.0AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBankAY8706030.0AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624912.11e-168probable WRKY transcription factor 65
TrEMBLA0A0E0C7F51e-178A0A0E0C7F5_9ORYZ; Uncharacterized protein
STRINGOMERI01G26590.11e-179(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-37WRKY DNA-binding protein 65