PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539008.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 396aa    MW: 42813.5 Da    PI: 6.0402
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539008.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC45.41.4e-1498123126
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkk 26 
                        d+epgrCrRtDGKkWRCsr++++++k
  KN539008.1_FGP007  98 DPEPGRCRRTDGKKWRCSRDAVADQK 123
                        79*********************997 PP
2QLQ58.12.7e-203268137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++
  KN539008.1_FGP007 32 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 68
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-113268IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.1E-153367IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.0873368IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166714.69898146IPR014977WRC domain
PfamPF088792.1E-1199123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MPLYYGTPAS CSGLSSVSLS SSMQGAMARV RGPFTPSQWI ELEHQALIYK YLAANSPVPH  60
SLLIPIRRSL TSPYSPAYFG SSTLGWGSFQ LGYSGSADPE PGRCRRTDGK KWRCSRDAVA  120
DQKDLANKHN ESEQVQDSDS LSMLTSISTR NTGSLFPFSK QHNPFEVSNS RPDFGLVSPD  180
SLMSSPHSSL ENVNLLTSQS LNEQQSSVSL QHFVDWPRTP AQGALAWPDA EDMQAQRSQL  240
SISAPMASSD LSSASTSPIH EKLMLSPLKL SREYSPIGLG SAANRDEVNQ GEANWMPMFR  300
DSLMGGPLGE VLTKNNNMEA RNCLSASLNL LNDGWDSSSG FDSSPVGVLQ KTTFGSVSSS  360
TGSSPRLESH SVYDGNSNLR DDLGSVVVNH PSIRLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539008.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209830.0AC120983.6 Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence.
GenBankAK0735780.0AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628630.11e-173growth-regulating factor 6
SwissprotQ6AWY31e-174GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLJ3LSG80.0J3LSG8_ORYBR; Uncharacterized protein
STRINGOB03G39940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-36growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]