PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539006.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7874.26 Da    PI: 10.7913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539006.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.9e-171161250
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50
                       rie+  +r + f kR++g+ KKAeEL vLCda v  +++  s +g+l+ ++
  KN539006.1_FGP011 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDGRLHHFA 61
                       8*********************************8766522789****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-14263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.698264IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-16363IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-11424IPR002100Transcription factor, MADS-box
PfamPF003191.4E-191160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSDDGRLHHF  60
AAPAKYALSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539006.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-106CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
GenBankCR8551151e-106CR855115.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880634.18e-26MADS-box transcription factor 33-like isoform X3
TrEMBLB9FEV84e-36B9FEV8_ORYSJ; Uncharacterized protein
STRINGOGLUM04G10090.11e-33(Oryza glumipatula)
STRINGONIVA04G08280.11e-33(Oryza nivara)
STRINGORGLA02G0342800.11e-33(Oryza glaberrima)
STRINGOBART04G10400.12e-33(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-15AGAMOUS-like 21