PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539002.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 774aa    MW: 86826.7 Da    PI: 8.42
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539002.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.67.8e-16107164259
                        --SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+Wr  Gq +++g ++    YY+C++a+C+v+k v rsa d++++++   g Hnh+
  KN539002.1_FGP004 107 DDGYHWRMCGQNTIQGEPCQTiFYYQCAQANCMVQKSVARSA-DGQTTQTFSMGVHNHP 164
                        8****************986527*******************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081113.046101166IPR003657WRKY domain
SuperFamilySSF1182903.92E-15102165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-14104165IPR003657WRKY domain
SMARTSM007745.9E-8106165IPR003657WRKY domain
PfamPF031065.2E-14107164IPR003657WRKY domain
SMARTSM006143.6E-12280331IPR003656Zinc finger, BED-type
PfamPF028922.7E-5283328IPR003656Zinc finger, BED-type
SuperFamilySSF576671.67E-6283331No hitNo description
SuperFamilySSF530981.21E-45417755IPR012337Ribonuclease H-like domain
PfamPF143723.0E-19638737IPR025525hAT-like transposase, RNase-H fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MAPPQQHRFL CLVCSSASSR SEPCLLLDLP RRGTSTLWLA GSLDPSKKNR KGQPQYGMAD  60
HGFRPFSASI SAPSTAQQHT GSSSNTAVIQ VATPPSHTDY GNIYLADDGY HWRMCGQNTI  120
QGEPCQTIFY YQCAQANCMV QKSVARSADG QTTQTFSMGV HNHPQRSVRW LRDGSERLEP  180
MSQVGVLVGA SDAAGATVGP SVPETGNGND QTSGSSDSDE DNDSDVGIDG DAAAAAADAN  240
ALQRHVAAPI QGNIARTASE VGILDHRARH ENSHPRKKRR FKSKVWEEFK AVLIDGKVQS  300
AICNHCKNCL VGETTKGTSH LHRHLKSCPA KAGTSRVQKK QRISTLQPDS SVSKDLKYGQ  360
VNPLEEFMRA IVSKLCPFSA MYGASFAPFL AGRNPVLYMV PQATLEEKFL SVYEKEKQKL  420
KEKITATPGG VFLSLDSWYW DADVELYIIC ITVHFIDGDW KINRKTIRCS PKLVGSYMLG  480
LLPRLKSNIV NVKVVLKEVV QDWGLQEKLL GVTLQPSEDS IKEASLHLED DLTGRKYLVA  540
KCKLLNIPCI IACSPERKQK YEQVLSQLHL DGASYGSKNW YSQFCLYEAA LQFIKSFPLP  600
EDRRHQTNPL RPSFDDLEAI ESFCKIARPI YIAVKAISGP HNVMYNSYFH VIWRLVAVIR  660
ELPSMNNTER SFHVPVVQKE FDNNWRKWYL WLSIAVVLDP RYKLGFIELC FRQDFSHDAG  720
MYISEVRAKL YELYIQYSYD NGQSNEILNN RNSDSVTYIG YFQVLFSFHN PLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KKRRFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539002.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648157.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1
RefseqXP_015648158.10.0zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
TrEMBLA2YS660.0A2YS66_ORYSI; Uncharacterized protein
STRINGORUFI08G06360.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-12WRKY DNA-binding protein 58