PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538974.1_FGP027
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 341aa    MW: 37222.6 Da    PI: 9.6104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538974.1_FGP027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-065981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  KN538974.1_FGP027 59 FVCEVCNKGFQREQNLQLHRRGH 81
                       89*******************88 PP
2zf-C2H2140.00015135157123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  KN538974.1_FGP027 135 WKCDKCNKRYAVQSDWKAHSKTC 157
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-85881No hitNo description
PfamPF121712.0E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0945981IPR007087Zinc finger, C2H2
SMARTSM003550.00415981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355140100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-6123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-8130155No hitNo description
SMARTSM00355110135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MACLGLLLVM VAKWRTLLTL LVVIFLMPHG GLGDNVGAGD PDAEVVALSP HTLLATNRFV  60
CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPKETRRRVY LCPEPSCVHH DPSRALGDLT  120
GIKKHYSRKH GEKKWKCDKC NKRYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR  180
AFCDALAQES GRIMPPMGAA LYATAGAGMA IGGLTRLAAS HQLQPFQDHS SAITTAANAA  240
AQFDHLMATS SAAAVSPAFR AAQPTSSSSS PFYLGGADDG QAHTSLLHGK PAVASSRQMM  300
DEASHAKGSE ITPNSGRTKS NLMFNFYANV ENVFNMVLSL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34131193365Zinc finger protein JACKDAW
5b3h_F2e-34131193365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538974.1_FGP027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721280.0AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998300.0AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650033.11e-162protein indeterminate-domain 6, chloroplastic
RefseqXP_025883278.11e-162protein indeterminate-domain 6, chloroplastic
RefseqXP_025883279.11e-162protein indeterminate-domain 6, chloroplastic
RefseqXP_025883280.11e-162protein indeterminate-domain 6, chloroplastic
RefseqXP_025883281.11e-162protein indeterminate-domain 6, chloroplastic
TrEMBLA0A0E0AYR61e-162A0A0E0AYR6_9ORYZ; Uncharacterized protein
STRINGORUFI08G25660.11e-162(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-104indeterminate(ID)-domain 5