PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538973.1_FGP004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 573aa MW: 59466.6 Da PI: 4.7465 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 326.2 | 6.3e-100 | 241 | 509 | 1 | 274 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsP 89 lv++Ll+cAeav+++++++a+al++++ +la+++g +m+++aayf eALa+r++r ++p +++ ++++a+ l f+e +P KN538973.1_FGP004 241 LVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYR--------FRPADST---LLDAAFADLLhahFYESCP 321 689****************************************************........5565555...3333333333334****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 +lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ l KN538973.1_FGP004 322 YLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGL 413 ******************************************************************************************** PP GRAS 182 vakrledleleeL......rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 va +l+dle+ +L + E++aVn+v++lhrll+++++le+ vL +v ++P++v+vveqea+hns+sFl+rf+e+l+yy KN538973.1_FGP004 414 VAATLADLEPFMLqpegeaD--AneePEVIAVNSVFELHRLLAQPGALEK----VLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYY 499 *************6555442..15579***********************....************************************** PP GRAS 265 salfdsleak 274 s++fdsle + KN538973.1_FGP004 500 STMFDSLEGG 509 *******876 PP | |||||||
2 | GRAS | 39.9 | 6.2e-13 | 529 | 569 | 335 | 374 |
GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +qa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr KN538973.1_FGP004 529 DQASTLLALFAgGDGYRVEEKEGCLTLGWHTRPLIATSAWR 569 79**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 5.9E-31 | 39 | 120 | No hit | No description |
Pfam | PF12041 | 6.5E-35 | 39 | 112 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 51.71 | 215 | 573 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-97 | 241 | 509 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-10 | 529 | 569 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006808 | Biological Process | regulation of nitrogen utilization | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010233 | Biological Process | phloem transport | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MKREYQEAGG SSGGGSSADT GSCKDKVMAG AAGEEEEVDE LLAALGYKVR SSDMADVAQK 60 LEQLEMAMGM GGVSAPGAAD DGFVSHLATD TVHYNPSDLS SWVESMLSEL NAALPPIPPA 120 PPAARHASTS STVIGGGGSG FFELPAAADS SSSTYALRPI SLPVVATADP SAADSARDTK 180 RMRTGGGSTS SSSSSSSSLA GGASRGSVVE AAPPATQGAA AANAPAVPVV VVDTQEAGIR 240 LVHALLACAE AVQQENFAAA EALVKQIPTL AASQGGAMRK VAAYFGEALA RRVYRFRPAD 300 STLLDAAFAD LLHAHFYESC PYLKFAHFTA NQAILEAFAG CRRVHVVDFG IKQGMQWPAL 360 LQALALRPGG PPSFRLTGVG PPQPDETDAL QQVGWKLAQF AHTIRVDFQY RGLVAATLAD 420 LEPFMLQPEG EADANEEPEV IAVNSVFELH RLLAQPGALE KVLGTVHAVR PRIVTVVEQE 480 ANHNSGSFLD RFTESLHYYS TMFDSLEGGS SGQAELSPPA AGGGGGGTDQ ASTLLALFAG 540 GDGYRVEEKE GCLTLGWHTR PLIATSAWRV AAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-48 | 248 | 568 | 26 | 378 | Protein SCARECROW |
5b3h_A | 6e-48 | 248 | 568 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-48 | 248 | 568 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538973.1_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB030956 | 0.0 | AB030956.1 Oryza sativa Japonica Group mRNA for OsGAI, complete cds. | |||
GenBank | AB262980 | 0.0 | AB262980.1 Oryza sativa Japonica Group SLR1 gene for DELLA protein, complete cds. | |||
GenBank | AC087797 | 0.0 | AC087797.5 Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence. | |||
GenBank | AK242577 | 0.0 | AK242577.1 Oryza sativa Japonica Group cDNA, clone: J090009G04, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631543.1 | 0.0 | DELLA protein SLR1 | ||||
Swissprot | Q2TN88 | 0.0 | SLR1_ORYSI; DELLA protein SLR1 | ||||
TrEMBL | A0A0D9ZC93 | 0.0 | A0A0D9ZC93_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G31610.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-147 | GRAS family protein |