PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538969.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 132aa MW: 13967.2 Da PI: 10.1654 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.4 | 3.2e-08 | 51 | 95 | 18 | 62 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 r R+RKka++ eLe k+k Le N +L +++++l++e +l++ KN538969.1_FGP008 51 RQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 95 567*************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-4 | 44 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.887 | 44 | 99 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.8E-11 | 52 | 98 | No hit | No description |
SuperFamily | SSF57959 | 1.63E-7 | 52 | 96 | No hit | No description |
Pfam | PF07716 | 2.0E-6 | 53 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLKEGG GGVESDEEIR RQARERKKAY 60 MTELEAKAKD LELRNAELEQ RVSTLQNENN TLRQILKNTT AHAGKRGGGG GGGGGKGGDG 120 GGGGKKHHFT KS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | GGKGGDGGG |
2 | 115 | 124 | KGGDGGGGGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538969.1_FGP008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365648 | 6e-67 | AK365648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2035O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968380.1 | 2e-30 | transcription factor HY5 | ||||
TrEMBL | A0A287KG37 | 9e-38 | A0A287KG37_HORVV; Uncharacterized protein | ||||
STRING | OPUNC01G04590.1 | 7e-32 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 2e-18 | bZIP family protein |