PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538958.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 140aa MW: 16036.1 Da PI: 10.0496 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.2 | 7.5e-13 | 44 | 99 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 e +r rr+++NRe+ArrsR RK+ ++ eL+ v L N++L +el++ ++ KN538958.1_FGP001 44 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSD 99 56899******************************************998877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.1E-15 | 42 | 106 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.553 | 44 | 95 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.6E-10 | 44 | 98 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.38E-11 | 46 | 95 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-10 | 46 | 95 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.76E-12 | 51 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAPSPFHFPA ATCEPIQELL PVVAGNRPAG SGSTDDAYQM AVEEERRRRR MISNRESARR 60 SRMRKQRQLS ELRGQVVHLR DANRRLLDEL NQAMRGCSDV HCENARLRKE RAELQTKLEH 120 LMQAQKNNTS PSSSQPCENI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 65 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538958.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108319 | 0.0 | AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence. | |||
GenBank | AP006169 | 0.0 | AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612405.1 | 1e-97 | basic leucine zipper 8 | ||||
TrEMBL | A0A0E0B499 | 2e-96 | A0A0E0B499_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QSP8 | 2e-96 | A0A0E0QSP8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q69JJ9 | 2e-96 | Q69JJ9_ORYSJ; Os09g0474000 protein | ||||
STRING | OGLUM09G14340.1 | 4e-97 | (Oryza glumipatula) | ||||
STRING | ORUFI09G14730.1 | 4e-97 | (Oryza rufipogon) | ||||
STRING | OS09T0474000-01 | 4e-97 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38800.1 | 3e-10 | basic leucine-zipper 43 |