PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538957.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 629aa    MW: 67160.2 Da    PI: 9.0602
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538957.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.2e-12157218162
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++    + a+l+++
  KN538957.1_FGP004 157 EEDKRRAARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISFVVAQNATLRQQ 218
                        5677899*********************************9999999999888888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-14156221IPR004827Basic-leucine zipper domain
PfamPF001701.5E-10158219IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76159219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-15161220No hitNo description
SuperFamilySSF579593.24E-11161219No hitNo description
CDDcd147041.54E-19162213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MATFQMRPYN ETVHIVSCGR GGDDDDDLPL DGLEFDLPGD FSVEDFLLRS PERDHSGEGS  60
AAGSGPTASP SSSPTTSASN SAVANGSGGE VKHEESDEGR SGGGDPKWSL KRKQASPGPS  120
SDAAKCRRSG DGDVSPSASG SRTAVDSDEG GTVCEEEEDK RRAARLMRNR ESAQLSRQRK  180
KRYVEELEEK VKSMHSVIND LNSRISFVVA QNATLRQQLS GGSVNCPPPG VYPPAPIPGM  240
HFPWVPGYAM RPPGSHVPLV PIPRLKPQQP VPSSKVVKKP ESKKTVENKS KSKTKTKKVA  300
SVSLLGLLLI MLVFGAFIPG FNQNFGMGGQ SDNAMFRNFG QSHARVLSVS SQDKSSLNNS  360
DMIGKMTGNT DGPGKKHQPA HNSSEILPAL LYVPRNGKHV KINGNLIIHS VLASEKAVAH  420
KASKDDSDQS ARDHKETSVA IAHYLSLPGK DVNRQETSSA DGPLPQWFRE GMEGPILNSG  480
MCSEVFQFDI STASSNPGGI IPASPVVNSS SVNATEKIPA HSAAYHGKLK NRRVMYNEAI  540
PLTGKTANNT EPFNRTSESS SKLPDSKPAS SVVVSVLADP REAGNGDGDP RVSPKPLSKI  600
FVVVLVDGVR YVTYSCTLPF KSSSPHLVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159181KRRAARLMRNRESAQLSRQRKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538957.1_FGP004
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731420.0AK073142.1 Oryza sativa Japonica Group cDNA clone:J033024D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640085.10.0bZIP transcription factor 39
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA0A0D9ZZ520.0A0A0D9ZZ52_9ORYZ; Uncharacterized protein
STRINGOGLUM05G17320.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.16e-83bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]