PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538938.1_FGP015
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 715aa    MW: 75438.9 Da    PI: 3.8322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538938.1_FGP015genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.53.6e-2571381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ +e +fF+ ++ k+ +g+r++r + + gyW+ +     
  KN538938.1_FGP015   7 LPPGLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDEAFFFADARAKNGRGSRQKRtVESGGYWQGQRMcvd 97 
                        79****************************99***************743.456789*******************555589**97765443 PP

                NAM  89 .dkevlsk..kgel.vglkktLvfykgrapkgektdWvmheyrl 128
                         +k v+    +g +  + k +L ++ ++ +kg ++ Wvmhey++
  KN538938.1_FGP015  98 gEKLVV-PdgGGVEiAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 138
                        233333.245444426666777777.566665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-334157IPR003441NAC domain
PROSITE profilePS5100529.4997157IPR003441NAC domain
PfamPF023652.3E-158137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MAAADGLPPG LRFEPKDDEL VARFLLARIQ GKPLPLHGVI LDADPLCAPP WRLLADHGRG  60
DEAFFFADAR AKNGRGSRQK RTVESGGYWQ GQRMCVDGEK LVVPDGGGVE IAWRKYVLSY  120
FADGEKGSSG WVMHEYAITA PADLASSTMR LYRIRFSGHG KKRKREPESQ SAHDEHGRAR  180
CGPQIAMAET ALLLEDSAPP PQPVHPPAAV VNCVSDITDQ GSSLVFPDQP GSIYEDELQS  240
FVPEFAARNL FVSLPEGSRD VVAEAAVIED LALPPQPVPP AEVVNQADDS EGADQGCSSV  300
FAALPDLIVL PPEEDCGSGG AAPAPSWASS LDNQNDDTPA FFEFPESMDD MVGCFDFASM  360
DNQSCTSAVS EIAVLEEPFL PPPAMVNHHD GSVSNIADQS CSGVGDDSSR VNLTGSIDED  420
ELQSSVPDFT AHNLFVSLPQ GSREADAEAD SGGGVASAQF AEFGCPESMD DLSCSGVVDD  480
SSMMYPLNSP AEAGDGGGRA APASSWVSSL DNQNDEAPMF FELPDSLDDM VGCFDFAAMD  540
GQSCASAVSE TALIEELVLP PAAMVNHHDD SVSDIADHGC SGADPPPSAV VNLPNDSDGA  600
DQSCSGVVDD SLPGYYEAEP KLLLEYTACN PVDSPAKGSH DHEAGVDASG GTGSMMSSPD  660
KQREPSSSGV MDVEATGFGV PDSMDGLSCI DFAETMDDLS CIDFTIDDEL FDLWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538938.1_FGP015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0052570.0AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6Z3940.0Q6Z394_ORYSJ; Os07g0196800 protein
STRINGONIVA07G05270.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-16NAC domain containing protein 47