PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538935.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 161aa MW: 17778.2 Da PI: 10.2558 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.6e-10 | 43 | 83 | 13 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 NR +A+rsR RK+++i eLe+ v +L++e + L ++ l KN538935.1_FGP003 43 NRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLD 83 *****************************988877666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-5 | 33 | 95 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.8E-10 | 40 | 89 | No hit | No description |
CDD | cd14703 | 1.75E-19 | 40 | 87 | No hit | No description |
Pfam | PF00170 | 4.5E-8 | 42 | 82 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-12 | 43 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAQLPPKIPV AAPGHHQHWA SAGGAGDAAW ADEFAEFAAI LANRQSAQRS RVRKLQYISE 60 LERSVTTLQN EVSVLSPRVA FLDQQRTILT VGNSHLKQRI AALAQDKIFK DAHQEALRKE 120 IERLRQVYQQ QNTKLSGGLA ADHAHVHGGP PPVRAEKELM S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538935.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108553 | 0.0 | AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646335.1 | 3e-81 | PREDICTED: basic leucine zipper 6, partial | ||||
Refseq | XP_015634100.1 | 4e-81 | basic leucine zipper 6 isoform X1 | ||||
Swissprot | Q5JMK6 | 3e-82 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | A0A0D3EU49 | 3e-90 | A0A0D3EU49_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G31310.1 | 5e-91 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 5e-50 | bZIP family protein |
Publications ? help Back to Top | |||
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