PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538932.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28088.8 Da    PI: 8.7715
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538932.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krienk+nrqvtfskRr+g+lKKA+ELSvLCdaeva+iifss+gklye+ 
  KN538932.1_FGP003  9 KRIENKINRQVTFSKRRTGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                       79**********************************************95 PP
2K-box103.13.6e-3479173599
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        s+++l+  +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++
  KN538932.1_FGP003  79 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKN 170
                        334488899*********************************************************************************** PP

              K-box  97 kle 99 
                        kle
  KN538932.1_FGP003 171 KLE 173
                        *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.291161IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.21E-42277No hitNo description
SuperFamilySSF554559.94E-32276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-32323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-3187172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.61388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRTGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GINTTLEKYN SCCYNAQGSN SALAGGEHQS WYQEMSRLKT KLECLQRSQR HMLGEDLGPL  120
SIKELQQLEK QLEYSLSQAR QRKTQIMMEQ VDDLRRKERQ LGELNKQLKN KLEAEADSSN  180
CRSAIQDSWV HGTVVSGGTV LNAQPPPDID CEPTLQIGYY QFVRPEAANP RSNGGGGDQN  240
NNFVMGWPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21169169MEF2C
5f28_B1e-21169169MEF2C
5f28_C1e-21169169MEF2C
5f28_D1e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538932.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1091530.0AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634419.10.0MADS-box transcription factor 17-like
SwissprotQ7XUN20.0MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A0D3FZB80.0A0A0D3FZB8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZPN60.0A0A0D9ZPN6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H5180.0A0A0E0H518_ORYNI; Uncharacterized protein
TrEMBLA0A0E0H5190.0A0A0E0H519_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PD480.0A0A0E0PD48_ORYRU; Uncharacterized protein
TrEMBLQ0JAS40.0Q0JAS4_ORYSJ; MADS17
STRINGOGLUM04G22680.10.0(Oryza glumipatula)
STRINGORUFI04G24470.10.0(Oryza rufipogon)
STRINGOS04T0580700-010.0(Oryza sativa)
STRINGOBART04G22790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41873566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-91AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]