PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538917.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 705aa    MW: 74221.7 Da    PI: 10.1012
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538917.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07208252244
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                        ++W+ eEd  l  +++++G g+W  I ++      Rt  q++ rw
  KN538917.1_FGP010 208 KPWSREEDMELGAGIQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 252
                        68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.959202260IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-11202259IPR009057Homeodomain-like
SMARTSM007174.5E-6206258IPR001005SANT/Myb domain
PfamPF002491.3E-5208252IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-12209268IPR009057Homeodomain-like
CDDcd116602.06E-17210257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDAAAAAAAA GGGAAKRKRS FSEDDAYLIL HRYQPATILT MLQEMGKQVG AGKGIDWRAL  60
VRRTSTGITS AREYQMLWRH LAYGHEFVES VEPAALPLDD GSDLECEIEI VPAPGNEALA  120
EATSFAKTII TGSSREQTSG QRVNSEAAAL NTPNEKIVRV PSDKQLVPGH RLTNGTGPVS  180
SSKQPSHTGS SPDPLDPNGH PKKKKKPKPW SREEDMELGA GIQKHGEGNW MEILHKYKFD  240
SSRTHLQLQQ RWALICKRQG STKPATPKIP NVMSEELKAA QKAFSLAIGT TRSSTLRPGG  300
VPHHNPMVTT TTPEVKSVTA PSPLPVPVHV VPVPVPVQPV QVQLPPPQLH QAPAQSAPPP  360
PKVSNASNKS RNNSKKQAAQ SIPVNGPLSI QEAALAAGGR IAEPSVATNF LKAAQSTKAV  420
HIRSRGTGSS KSSTGSKTPT VAGEPGTQLG SDQHLELQST GGPSQVLTAH ATEQVHNVSE  480
VAGVNPLGQS AGVHLSETKK ALNTTPVSGS SDKMEIDDNS NYFAVTMEDL FPEDVKQEDV  540
QDPKIEEAID PKDADMLEFD RFVAQGCLNK DNVDKSKAAK IAPEAQSVIG SQKKQLKTLP  600
TVGKSNPVFA GPPATAKKTK APVPQGGMSS GIVGVLNRSL GGKAPAPATT GTQNTVQKQQ  660
SMSSKGNLLV PKNVASGTVT PANNRANTAV SGASKVNPPA SQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PKKKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538917.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0684480.0AK068448.1 Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLA3A7W90.0A3A7W9_ORYSJ; Uncharacterized protein
STRINGOS02T0551400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-39MYB_related family protein