PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN538908.1_FGP013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 49aa MW: 5310.04 Da PI: 7.4173 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9e-10 | 14 | 47 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkg 34 +g+W++eEd l+++++++G+g +W + ++++g g KN538908.1_FGP013 14 KGPWSPEEDAMLKNYIEEHGTGgNWIALPHKIG-G 47 79************************9999999.6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-7 | 4 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 5 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.54 | 9 | 49 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-8 | 14 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-5 | 16 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 49 aa Download sequence Send to blast |
MGRAPCCDKA TVKKGPWSPE EDAMLKNYIE EHGTGGNWIA LPHKIGGQS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN538908.1_FGP013 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005495 | 6e-71 | AP005495.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03. | |||
GenBank | AP014964 | 6e-71 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 6e-71 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973097.1 | 1e-26 | transcription factor MYB36 | ||||
Refseq | XP_025821752.1 | 2e-26 | transcription factor MYB36-like | ||||
Swissprot | Q9M2Y9 | 2e-23 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A2S3I1G5 | 4e-25 | A0A2S3I1G5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D5E8 | 3e-25 | A0A2T7D5E8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A426ZFK4 | 1e-25 | A0A426ZFK4_ENSVE; Uncharacterized protein | ||||
TrEMBL | K3YMV2 | 3e-25 | K3YMV2_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J37063.1.p | 4e-26 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 7e-26 | myb domain protein 84 |
Publications ? help Back to Top | |||
---|---|---|---|
|