PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538892.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1031aa    MW: 115266 Da    PI: 6.3767
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538892.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.91.3e-55221373118
               CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                        + +krwl+++ei++iL n+++++l+ e+++rp sgsl+L++rk +ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++f
  KN538892.1_FGP004  22 EARKRWLRPTEICEILSNYRSFSLSPEPPNRPGSGSLFLFDRKTLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENF 113
                        459***************************************************************************************** PP

               CG-1  95 qrrcywlLeeelekivlvhylevk 118
                        qrr+ywlLee++++ivlvhylevk
  KN538892.1_FGP004 114 QRRTYWLLEEDFTHIVLVHYLEVK 137
                        *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.07416142IPR005559CG-1 DNA-binding domain
SMARTSM010761.9E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4922136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.203.2E-1789109IPR020683Ankyrin repeat-containing domain
CDDcd001020.00522449537No hitNo description
Gene3DG3DSA:2.60.40.102.3E-7450526IPR013783Immunoglobulin-like fold
PfamPF018331.2E-7450535IPR002909IPT domain
SuperFamilySSF812963.89E-17450536IPR014756Immunoglobulin E-set
SuperFamilySSF484032.02E-16626741IPR020683Ankyrin repeat-containing domain
CDDcd002042.45E-12641739No hitNo description
Gene3DG3DSA:1.25.40.203.2E-17641741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.033647741IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-7653742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778680712IPR002110Ankyrin repeat
SMARTSM002480.061680709IPR002110Ankyrin repeat
SMARTSM00248500719748IPR002110Ankyrin repeat
SuperFamilySSF525402.04E-8847905IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0082854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791855884IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055856875IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0051877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267878902IPR000048IQ motif, EF-hand binding site
PfamPF006123.1E-4880899IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MAETRKFLMP NQPPDISQMV LEARKRWLRP TEICEILSNY RSFSLSPEPP NRPGSGSLFL  60
FDRKTLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGVK QSFSRSKEEI MQLSGADSPS CSNSITSQNQ MTPQIMDAAE  180
SPISGQISEY EGAEPAKFGA ADNCRASSRY NPLIEMQQPL DGIVMDSILY PSASAICNQV  240
SGYHGELPPG TSNLNGHTFT HSDIARMFDD SSSGLRDISR TLFDSMPYDE HLSGYANGFM  300
EPTLHSSFSM IEANNLEDSS LLETFTSEAL YTNNLSQKEA DALSFAGISS PEVNGNKYTE  360
GSTKHPLLKQ LPLDLFKIES SGLKKHDSFS RWMSKELGEV VDLGIKSSSD ALWSSTENVN  420
AADGPSAPIN EQLDAYAVSP SLAQDQLFSI LDISPSCSYI GLKTKVLVTG TFLASKENVE  480
NCKWSCMFGD VEVPAEVLAD GSLRCYAPEH QSGRVPFYVT CSNRIACSEV REFEYRDSDA  540
QYMETSHSQA NGINEMHLQI RLEKLLSLGP DDNQLLVCGN EKLELINAIN SLMLDEKWSD  600
QGSPSGSKDV VTPRNQSLKK LMKEKLHCWL IYKINDCEKG PNILGKEGQG IIHLVAALGF  660
DWAIRPILVA GVNVNFRDAH GWTALHWAAS CGRERTVGVL IANGAAAGAL TDPTSEFPSG  720
RTPADLASTN GHKGIAGFLA ESALTSHLSA LSLKDSKDSN VEEARGLTIP EDIPEMYSGQ  780
LAVQDSHAES LKDSLSAVRK SAQAAARIFQ AFRVESFHRK KVVEYGDDDC GLSDEHTFSL  840
ISLQKVKQGQ HDTRLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKNYKK  900
VVWSVGIVEK VILRWRRKGR GLRGFRPEKQ LEGQTQIQPA KTEDEYDYLQ DGRRQAEGRL  960
QRALDRVRSM TQYPEAREQY RRLTTCVAEM QQSRMMQDEM LSEAAGADGS DFMNGLEDLI  1020
CRDDPQMSAI W
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538892.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703500.0AK070350.1 Oryza sativa Japonica Group cDNA clone:J023052K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631089.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0D9Z8A40.0A0A0D9Z8A4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G20490.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1