PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538875.1_FGP037
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 372aa    MW: 42864.6 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538875.1_FGP037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-05661031254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  KN538875.1_FGP037  66 RRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 103
                        9*****************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.38254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-657109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1066113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-466108No hitNo description
Gene3DG3DSA:4.10.280.103.9E-1067113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF101534.1E-23204301IPR019310rRNA-processing protein Efg1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006364Biological ProcessrRNA processing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTPRVAAARR CSTRSSRSRA EQPSGRSRRR RGRRQVRSIR TFKFEGIVTR EFFFSDKCAE  60
QIQFLRRERI AERMRALQEL VPNTNKTDRA AMLDEILDYV KFLRLQVKVL SMSRLGGAGA  120
VAQLVADIPL SVKGEASDSG GNQQIWEKWS TDGTERQSMV SCTHMLCLAG EETAGLTIQR  180
SKFFCALLMS EYYGSLIDLG IAELLVNQDL PNDIRVAQEK KLEELKRQQE LQNQLAIQRT  240
VQLRDRKIKF FERRKIERMI RRLEKQQRSN ADDASNKLSK LKEDLEYVRF FPKNEKYVSL  300
FSGGNTPDML EKRNKWRKQI KENLMAAAEN GKDLEETASD DDTVDVSDDD FFMSGSSSDE  360
EADDEWTDKS AK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538875.1_FGP037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0616480.0AK061648.1 Oryza sativa Japonica Group cDNA clone:001-036-B12, full insert sequence.
GenBankAK0988760.0AK098876.1 Oryza sativa Japonica Group cDNA clone:J013001D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D8771e-140A0A0E0D877_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP666622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-27bHLH family protein