PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538867.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 111aa MW: 12743.3 Da PI: 4.3069 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.8 | 3.7e-14 | 39 | 79 | 47 | 87 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 ++++e++r da++slvyeA+ r+rdPvyG++g il+lqqq KN538867.1_FGP002 39 QEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQE 79 7899**********************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.7E-12 | 39 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MSTASVKINV ESPNPNTVIS CYISFLSLFI SDWQDHHDQE VHESQRGDAA NSLVYEANLR 60 LRDPVYGCMG AILTLQQQEG VTIQQLFYLL EFQVAYEKWE ITENQAIRLA Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538867.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134341 | 1e-55 | AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence. | |||
GenBank | AP014961 | 1e-55 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-55 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167556.1 | 6e-21 | LOB domain-containing protein 15-like | ||||
TrEMBL | A0A287EY34 | 3e-20 | A0A287EY34_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A452Y3G4 | 6e-20 | A0A452Y3G4_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_56075.1 | 2e-20 | (Hordeum vulgare) | ||||
STRING | Traes_1DS_BB8508CC6.1 | 2e-20 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-18 | LOB domain-containing protein 13 |