PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538824.1_FGP012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | VOZ | ||||||||
Protein Properties | Length: 567aa MW: 63434.7 Da PI: 4.8659 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 430.1 | 3.2e-132 | 268 | 485 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 p p+afl+pkcalwdc+rpaqgse++qdycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip+cegaatakspwn KN538824.1_FGP012 268 PVPAAFLRPKCALWDCPRPAQGSERWQDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPVCEGAATAKSPWN 359 89*************************************9879************************************************* PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalaly 183 a+elfdl ++ege+irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da+aly KN538824.1_FGP012 360 APELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALY 451 ******************************************************************************************** PP VOZ 184 rlelklvdekksakgkvskdsladlqkklgrlta 217 rle+k++d+kk+ak+k+++++l+++q++++rl+a KN538824.1_FGP012 452 RLEFKSSDAKKTAKSKLACNPLNEIQQQMVRLSA 485 ********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MTTLFEASKQ SINKNKPERA AGNNRALSDP PSETLRLLQL AAAEEEEDDA TSKLVEQQHP 60 PSANQAHGHA QAQGGQDMKP EPPEEAVASP ADLTVPQQPQ SPGQGVLASG GGMLAPAAAA 120 VFHDQSVERK LQSLCELWYN GTLLVGWMWI LGNELHGWRE LLEVCEVEKE HEHGTCHGCG 180 WDGTKQMYYV NQELTVEDFL YDDNYKMYLP GYNADVLNNL ESTGQLEYPQ FNLPQELPPN 240 AYLDTSNCGQ NAGDVFLHMS DLLNTMSPVP AAFLRPKCAL WDCPRPAQGS ERWQDYCSMY 300 HADLAVKEEG PPGTMPVIRP RGIDLKDGPL FAALSAKIQG KHVGIPVCEG AATAKSPWNA 360 PELFDLYIFE GESIREWLFF DKPRRAFESG NRKQRSLPDY NGRGWHESRK QVMKDFGGLK 420 RSYYMDPQPS NSYEWHLYEY EINDCDAFAL YRLEFKSSDA KKTAKSKLAC NPLNEIQQQM 480 VRLSADSPVE NKRSARSRTK ANPNDINSNI YLVQNTTVQG SIPNAYQAVS QADQMTYLNG 540 NVVYGPHLPY GYSTERSDFY WSSNDGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538824.1_FGP012 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241765 | 0.0 | AK241765.1 Oryza sativa Japonica Group cDNA, clone: J065205E23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621735.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-124 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | B9EZQ0 | 0.0 | B9EZQ0_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM01G35310.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI01G34290.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA01G35590.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-119 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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