PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538807.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 444aa    MW: 49900.8 Da    PI: 7.1626
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538807.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19310405395
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++
  KN538807.1_FGP010 310 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SES 399
                        89************************888999********7778*******9989999999**99.9*******************43.377 PP

                        E..EEE CS
                 B3  90 felvvk 95 
                        +++vv+
  KN538807.1_FGP010 400 GKFVVR 405
                        777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-25307406IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-23307405No hitNo description
SuperFamilySSF1019368.24E-19307403IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.516308410IPR003340B3 DNA binding domain
SMARTSM010194.2E-9308408IPR003340B3 DNA binding domain
PfamPF023623.5E-15310405IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MADARGSSSS SGDGGGGEGK GGGSHGDFVG GGQHNRYHGI LGAVPPPNVG RQNIVHHQYP  60
AASLIHQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH HHHGQSQISQ ENFQDWVPSN  120
NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH  180
PAAIEDHHAP LFHSNNHDID PGLEKGHYYI RVNPQGYQQP WESRIKWFLQ SSWETDTCME  240
LTSPELRPQK PPPLPPPEDP PIVFRRSDMD SEKNDDPDQT PVSEPPSMNQ NGENLIIRFN  300
CREYRVILRK ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVTLKMDDF KFETTWNFKY  360
RFWPNNKSRM YVLESTGGFV KHHGLQTGDI FIIYKSSESG KFVVRGEKAI KPNAIMPVVD  420
CSCKNELNKS EECGFTISLQ TKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-342994114117B3 domain-containing transcription factor LEC2
6j9c_D1e-342994114117B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538807.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0E0KWS90.0A0A0E0KWS9_ORYPU; Uncharacterized protein
STRINGOS04T0676650-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-38B3 family protein