PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538806.1_FGP020

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 317aa MW: 33063 Da PI: 9.5685

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538806.1_FGP020	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2.1e-11	130	168	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 + k rr+++NReAAr+sR+RKka+i++Le+ L++ KN538806.1_FGP020 130 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 168 67999*************************865555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-8	127	172	No hit	No description
SMART	SM00338	2.9E-8	128	191	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	130	175	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-9	131	171	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-7	132	175	No hit	No description
PROSITE pattern	PS00036	0	135	150	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAELDHIFLY LNSQDQASAA IQEQPQTLNI FPSQPMHAGE PSPKGSSSMA AAINSAPSNN 60 ALAIAAASSK RPAAGGQPSR LNNPADQPSA SGKDGKAAVV KKEGGGGGGK HHGGASSAAA 120 SEHEGPKTPD AKTLRRLAQN REAARKSRLR KKAYIQNLET SRIRLSQLEQ ELVQRSRTQG 180 AILGGGAFSA GIGGQSPEIV ARHAEPLTEQ QAAGVYGVQQ SAREREEALD RDLHATHHAL 240 SDAVSSDSLL LFPPGAGATA YSDVAMAHLS LAISNLSSLE AFVRQLMAAL GWLVGSGLSG 300 GLYKTVWLLR LIDYLAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538806.1_FGP020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004184	1e-127	AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBank	AP014958	1e-127	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-127	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626936.1	1e-109	transcription factor TGAL9-like isoform X2
Swissprot	Q0E342	1e-112	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	B8AJB3	1e-114	B8AJB3_ORYSI; Uncharacterized protein
TrEMBL	I1NY70	1e-114	I1NY70_ORYGL; Uncharacterized protein
STRING	ONIVA02G08860.1	1e-114	(Oryza nivara)
STRING	ORGLA02G0067600.1	1e-115	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	4e-20	bZIP family protein

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]