PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538752.1_FGP026
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 467aa    MW: 50022.2 Da    PI: 4.2401
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538752.1_FGP026genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-161152344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i n   r +t+ kR++g++KKA EL +LCd+ vav+ ++++g
  KN538752.1_FGP026 11 IANPQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52
                       789999**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778152IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.06E-26281No hitNo description
PRINTSPR004043.2E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-21383IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MARRKTSIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RALPAEKRAR HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA KRREALGLLP GADDDADVAG TNSVGVHGYR HQEVHAPATC  180
DPFHPYNAGV TLMQPGYNNV RYMGGHGVVD MSGYQLQMQM PSNGSNNNHG QLAWGGFQPY  240
NATFVQPVYG NLQCWDNNVV DGNGEPCDAI VPSAGDPYMD IAGNDVYGNQ MQPAPAANGG  300
WHNPGAWGND DGEPCKAIVP SSGDPYMDIG VYGNQMQPAA NGGWHNPAGT WSNDGEPCNA  360
IVPSAGHPYI DIECDLDGNY IDTTVFDYQT TSTSDNFMDA PVQFIATGSD ESIVTNVAGC  420
DETEFSIDDL LQCSDASQHS SGLEELHYLS DLADGFDFGC NFDVLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKTSIALIANPQTRATTYKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538752.1_FGP026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108280.0AK110828.1 Oryza sativa Japonica Group cDNA clone:002-171-H11, full insert sequence.
GenBankAP0034330.0AP003433.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004D12.
GenBankAP0034360.0AP003436.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0470A12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.20.0uncharacterized protein LOC4324340
TrEMBLA0A0E0FXH90.0A0A0E0FXH9_ORYNI; Uncharacterized protein
STRINGONIVA01G46660.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.12e-17AGAMOUS-like 86