PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538727.1_FGP051

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 695aa MW: 75880.2 Da PI: 7.7484

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538727.1_FGP051	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	102.6	3.2e-32	446	543	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +++r+ws+ De+v+L+Gli++++k+g+ +++di ++++++++++s++vs++ql++K+rrLK+K+++ ++ak+gke +f ++hd++i++l KN538727.1_FGP051 446 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSARVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQL 536 678**********************888899***********************************999999.9******** PP DUF573 92 skkiWgs 98 +kk+Wg+ KN538727.1_FGP051 537 AKKVWGT 543 ***95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51352	15.063	12	139	IPR013766	Thioredoxin domain
Gene3D	G3DSA:3.40.30.10	3.2E-37	22	135	IPR012336	Thioredoxin-like fold
SuperFamily	SSF52833	7.42E-34	25	133	IPR012336	Thioredoxin-like fold
CDD	cd03001	1.07E-53	30	131	No hit	No description
Pfam	PF00085	5.6E-28	31	129	IPR013766	Thioredoxin domain
TIGRFAMs	TIGR01126	1.7E-32	34	132	IPR005788	Disulphide isomerase
PRINTS	PR00421	3.9E-6	50	58	No hit	No description
PROSITE pattern	PS00194	0	51	69	IPR017937	Thioredoxin, conserved site
PROSITE profile	PS51352	13.958	159	290	IPR013766	Thioredoxin domain
Gene3D	G3DSA:3.40.30.10	1.4E-37	161	296	IPR012336	Thioredoxin-like fold
CDD	cd03001	7.18E-55	166	282	No hit	No description
SuperFamily	SSF52833	5.8E-29	168	285	IPR012336	Thioredoxin-like fold
Pfam	PF00085	3.4E-24	169	281	IPR013766	Thioredoxin domain
PROSITE pattern	PS00194	0	187	205	IPR017937	Thioredoxin, conserved site
PRINTS	PR00421	3.9E-6	194	203	No hit	No description
PRINTS	PR00421	3.9E-6	248	259	No hit	No description
Pfam	PF04504	4.9E-27	448	542	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0034976	Biological Process	response to endoplasmic reticulum stress
GO:0045454	Biological Process	cell redox homeostasis
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0009505	Cellular Component	plant-type cell wall
GO:0016853	Molecular Function	isomerase activity

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MRHAVAAALL LVAAAVAASP VSALYSAGSP VLQLNPNNFK SKVLNSNGVV LVEFFAPWCG 60 HCQQLTPIWE KAAVVLKGVA TVAALDADAH KELAQEYGIR GFPTIKVFVP GKPPVDYQGA 120 RDVKPIVEFA LSQVKALLRD RLNGKTSAGS GGKKSGGSSE KTEPSASIEL NSQNFDKLVT 180 KSKDLWIVEF FAPWCGHCKK LAPEWKKAAK NLKGQVKLGH VDCDAEKNTN SSVWSVDKSY 240 RSLMSKYKVE GFPTILVFGA DKESPFPYQG ARVASAIESF ALEQLEANAA PPEVSELTGP 300 DAMEEKCASA AICFVSFLPD ILDSKAEGRN NFVWTAAGKQ ADLEKQVGVG GYGYPAMVAL 360 NVKKGAYAPL RSAFQLDEIT CLMTKPVSCS EFVKEAGRGG KGNLPLDGTP TIVQSEPWDG 420 KDGEVIEEDE FSLEELMADN SPHSKRPSRV WSQADELVIL RGLITYRTKR GVLPGSTQDI 480 GKLHSYIRGQ LSARVSTTQL SDKVRRLKQK YQMLATRAKT GKEVFPTPHD HNIYQLAKKV 540 WGTMSTAGEG GGSGYDNADA GESEEEQYGR ESDDDTESGR DNRHRKNQRS VPVTMANGNG 600 TGIGAVNAIV RGRSEFEKGK DVYPYLWETV EELSSQHPTG AVFKKAFELL EGSKAQVMEE 660 KLRKFRLTEM RQQLRRMDLM KDTLSMVLDA LEMAD

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MRHAVAAALL LVAAAVAASP VSALYSAGSP VLQLNPNNFK SKVLNSNGVV LVEFFAPWCG  60
HCQQLTPIWE KAAVVLKGVA TVAALDADAH KELAQEYGIR GFPTIKVFVP GKPPVDYQGA  120
RDVKPIVEFA LSQVKALLRD RLNGKTSAGS GGKKSGGSSE KTEPSASIEL NSQNFDKLVT  180
KSKDLWIVEF FAPWCGHCKK LAPEWKKAAK NLKGQVKLGH VDCDAEKNTN SSVWSVDKSY  240
RSLMSKYKVE GFPTILVFGA DKESPFPYQG ARVASAIESF ALEQLEANAA PPEVSELTGP  300
DAMEEKCASA AICFVSFLPD ILDSKAEGRN NFVWTAAGKQ ADLEKQVGVG GYGYPAMVAL  360
NVKKGAYAPL RSAFQLDEIT CLMTKPVSCS EFVKEAGRGG KGNLPLDGTP TIVQSEPWDG  420
KDGEVIEEDE FSLEELMADN SPHSKRPSRV WSQADELVIL RGLITYRTKR GVLPGSTQDI  480
GKLHSYIRGQ LSARVSTTQL SDKVRRLKQK YQMLATRAKT GKEVFPTPHD HNIYQLAKKV  540
WGTMSTAGEG GGSGYDNADA GESEEEQYGR ESDDDTESGR DNRHRKNQRS VPVTMANGNG  600
TGIGAVNAIV RGRSEFEKGK DVYPYLWETV EELSSQHPTG AVFKKAFELL EGSKAQVMEE  660
KLRKFRLTEM RQQLRRMDLM KDTLSMVLDA LEMAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3idv_A	1e-38	31	317	10	241	Protein disulfide-isomerase A4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis. {ECO:0000269\|PubMed:21278127}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538727.1_FGP051

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005393	0.0	AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBank	AP005559	0.0	AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611801.1	0.0	protein disulfide isomerase-like 2-3
Swissprot	Q67UF5	0.0	PDI23_ORYSJ; Protein disulfide isomerase-like 2-3
TrEMBL	B8BCJ0	0.0	B8BCJ0_ORYSI; Uncharacterized protein
STRING	OGLUM09G12830.1	0.0	(Oryza glumipatula)
STRING	ORUFI09G13320.1	0.0	(Oryza rufipogon)
STRING	OBART09G12380.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-14	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Houston NL, et al. Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. Plant Physiol., 2005. 137(2): p. 762-78 [PMID:15684019] d'Aloisio E, et al. The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.). BMC Plant Biol., 2010. 10: p. 101 [PMID:20525253] Onda Y, et al. Distinct roles of protein disulfide isomerase and P5 sulfhydryl oxidoreductases in multiple pathways for oxidation of structurally diverse storage proteins in rice. Plant Cell, 2011. 23(1): p. 210-23 [PMID:21278127] Onda Y,Kawagoe Y P5-type sulfhydryl oxidoreductase promotes the sorting of proteins to protein body I in rice endosperm cells. Plant Signal Behav, 2013. 8(2): p. e23075 [PMID:23299424] Onda Y,Kobori Y Differential activity of rice protein disulfide isomerase family members for disulfide bond formation and reduction. FEBS Open Bio, 2014. 4: p. 730-4 [PMID:25161881]