PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538727.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 320aa    MW: 33919.4 Da    PI: 9.6208
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538727.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.8e-09265293533
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                        +r+rr++kNRe+A rsR+RK+aei e ++
  KN538727.1_FGP016 265 RRQRRMIKNRESAARSRARKQAEIMEMQK 293
                        79**********************99874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-9260298No hitNo description
SuperFamilySSF579598.02E-6265294No hitNo description
CDDcd147073.57E-13265290No hitNo description
PfamPF001707.3E-7265293IPR004827Basic-leucine zipper domain
PROSITE patternPS000360268283IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEFGNGGSSS SERRAAAEGA TLARQGSVYS LTFDEFQSAL AGGGGGGGGG SGFGKDFGSM  60
NMDELLRSIW TAEESQAMAS RQGSLTLPRT LSAKTVDEVW RNLVRDEPPP VGAADGGDMP  120
PQRQSTLGEM TLEEFLVRAG VVRENPPAAP PPVPPPMPPR PVPVVPKTTA FLGNFPGAND  180
AGAAALGFAP LGMGDPALGN GLMPRAVPVG LPGAAVAMQT AVNQFDSGDK GNSDLSSPTE  240
PMPYSFEGLV RGRRNGGGVE KVVERRQRRM IKNRESAARS RARKQAEIME MQKNEVEEMI  300
KDPFGRRKRL CLRRTLTGPW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538727.1_FGP016
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612550.10.0bZIP transcription factor TRAB1-like
SwissprotQ6ZDF31e-100TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLA0A0E0QSC10.0A0A0E0QSC1_ORYRU; Uncharacterized protein
STRINGORUFI09G13690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.12e-32ABRE binding factor 4
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]