PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538716.1_FGP012

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 371aa MW: 40612.2 Da PI: 8.3679

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538716.1_FGP012	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.5	9e-16	81	132	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ KN538716.1_FGP012 81 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEIMEMQ 132 79********************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-15	75	128	No hit	No description
SMART	SM00338	1.2E-14	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	79	130	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.48E-28	81	133	No hit	No description
Pfam	PF00170	4.0E-14	81	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-11	81	131	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MGFSPVGIGD PTMGNGLMSG VAGIGGGAIT VAPVDTSVGQ MDSAGKGDGD LSSPMAPVPY 60 PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE VQKLKEQNME 120 LQKKQEEIME MQKNFFPEMQ KNQKLFSVGR DGVHYSATKC TKYTISTEKV MITLIHGKQV 180 LEAVNNPYGQ KKRCLRRTLT GPWFDSEGCI MSEGFMPKMI NLGSHLTRKN KPDQSDTTVE 240 FHPHPDVLLQ GAGEGLVFLL GGQVNCIGLQ DSTESRPEND TVLVQIQGPA TVSSGSVTVQ 300 AGPNCRAKEE PIRDTNHWRQ HPGVPYAPGH GEPTPSLLGL RDTQRCPFSW TISEAILPSP 360 VIVREPEKTD G

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MGFSPVGIGD PTMGNGLMSG VAGIGGGAIT VAPVDTSVGQ MDSAGKGDGD LSSPMAPVPY  60
PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE VQKLKEQNME  120
LQKKQEEIME MQKNFFPEMQ KNQKLFSVGR DGVHYSATKC TKYTISTEKV MITLIHGKQV  180
LEAVNNPYGQ KKRCLRRTLT GPWFDSEGCI MSEGFMPKMI NLGSHLTRKN KPDQSDTTVE  240
FHPHPDVLLQ GAGEGLVFLL GGQVNCIGLQ DSTESRPEND TVLVQIQGPA TVSSGSVTVQ  300
AGPNCRAKEE PIRDTNHWRQ HPGVPYAPGH GEPTPSLLGL RDTQRCPFSW TISEAILPSP  360
VIVREPEKTD G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538716.1_FGP012

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023288	0.0	AB023288.1 Oryza sativa Japonica Group mRNA for TRAB1, complete cds.
GenBank	AY323482	0.0	AY323482.1 Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds.
GenBank	KT037117	0.0	KT037117.1 Oryza sativa Indica Group cultivar Nonabokra abscisic acid inducible bZIP protein (TRAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	5e-97	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	4e-98	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	B9G1D2	0.0	B9G1D2_ORYSJ; Uncharacterized protein
STRING	ORUFI08G19970.1	1e-131	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	3e-36	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]