PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538714.1_FGP046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 405aa MW: 45245.5 Da PI: 10.1312 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.1e-13 | 14 | 53 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg WT+eEd +l+ +++q W+ Ia+ ++ gRt++++k++w++ KN538714.1_FGP046 14 RGQWTPEEDNKLLSYITQ-----WSVIAAQLP-GRTDNDVKNHWNT 53 89**************96.....99*******.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.08E-15 | 2 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-19 | 9 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.523 | 9 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-10 | 13 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-11 | 14 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-10 | 17 | 55 | No hit | No description |
Gene3D | G3DSA:2.30.30.100 | 1.6E-29 | 240 | 317 | No hit | No description |
CDD | cd01724 | 1.08E-61 | 240 | 329 | No hit | No description |
SuperFamily | SSF50182 | 4.78E-22 | 240 | 350 | IPR010920 | LSM domain |
Pfam | PF01423 | 6.6E-18 | 241 | 305 | IPR001163 | LSM domain, eukaryotic/archaea-type |
SMART | SM00651 | 4.2E-17 | 241 | 306 | IPR001163 | LSM domain, eukaryotic/archaea-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MGRVPCCEKD NVKRGQWTPE EDNKLLSYIT QWSVIAAQLP GRTDNDVKNH WNTKLKKKLS 60 GMGIDPVTHK SFSHLMAEIA TTLAPPQVAH LAEAALGCFK DEMLHLLTKK RPSDFPSPAL 120 SISTGRVRVG AKVSTKCANG TTQVDELNFR SNQTEELVEA DEDTSTQKRS AKIHDFCFGI 180 PFGLATLFLG TLSLKFWRSG KSSFIFILGQ AAISAVLAWK YSHAYILTNR ILPWAFYASL 240 RFLMKLNNET VTIELKNGTV VHGTIIGVDI SMNTHLKTVK LTLKGKNPVT LDHLSVRGNN 300 IRYYILPDSL NLETLLVEDT PRVKAKKPTA GRAAWAVRRE RGAAVQWRGM CKLKFNRERV 360 GCYLLVILVV ALLIGVLFGL GVFRHGYERF KDLGRNHTCY DCNTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ah0_g | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ah0_j | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ah0_V | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ahd_b | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ahd_j | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ahd_V | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ff7_g | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6ff7_n | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6icz_c | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6icz_j | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6id0_c | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6id0_j | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6id1_c | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6id1_j | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qw6_41 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qw6_51 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qx9_11 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qx9_21 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qx9_41 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
6qx9_51 | 6e-38 | 240 | 330 | 4 | 94 | Small nuclear ribonucleoprotein Sm D1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538714.1_FGP046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606441 | 1e-143 | AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence. | |||
GenBank | AP014960 | 1e-143 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-143 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855166 | 1e-143 | CR855166.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0124N08, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-48 | myb domain protein 103 |