PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538709.1_FGP108
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 599aa    MW: 68227.4 Da    PI: 4.7375
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538709.1_FGP108genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.72.2e-2497183290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++ trt+Cka+++ + +++g+w+v++++ eHnHel+
  KN538709.1_FGP108  97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPDTRTNCKAMVRYRVDSEGHWRVIQIVPEHNHELV 183
                        7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2297183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MEETSIAIEI DGEAICLDSV GDNEEQGTHE NQEIQIIYDA ENEGQVAFDN GEQGKEEHPM  60
RNEEENQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR YRVDSEGHWR VIQIVPEHNH  180
ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHENL HMNDDGAECQ SQLGIQSYTL  240
LEPEDSEALV GYFKRRTIEQ GVLPETRHCI CQWSIEKNLQ SHLGTLNVSG TFHSMLTKCM  300
RECESEAEFE ETWAMMLNEC NMQDDQWLSD LYQQRRKWST VHHRDAFDGG INSLDRSDSS  360
NNVLSSIANE STSPTQFILD FDKLVGSWRT NESAEDIQCT QTSPESRVKH RSILEHAAEV  420
YTRKVYKSLE TEYLDGCSAT SYQEMQCSET LYRFEFILQR SGPKVQSKGH QDTRKLILDV  480
FENGEKLVES LCELKRLNAH ASGREKDGRN VKQAVSSQTA DTVLVDPPNQ NQYFATEDMA  540
TNSSIGRPFF YQGFPSAGVS TSQIQGHTNI HSVPQCAPQE YSAYGAAHPP PTFGGGRNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538709.1_FGP108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658380.0AK065838.1 Oryza sativa Japonica Group cDNA clone:J013039J03, full insert sequence.
GenBankAL7317480.0AL731748.3 Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620810.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A1E5WH110.0A0A1E5WH11_9POAL; Uncharacterized protein
STRINGOS12T0160900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-22FAR1-related sequence 1