PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538709.1_FGP039

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 555aa MW: 61066.5 Da PI: 4.5726

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538709.1_FGP039	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	167.5	1.1e-51	171	549	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgd........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lLl+ A av++gd+ a+a+++rl +l a +g+ + la yf+++L+ r+++ +++++s s a+++++ KN538709.1_FGP039 171 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatspVVDHLAYYFARGLKLRISG---------AATPAS---SLPPSPAYRMLQ 250 689999******************998777775567777766899***********.........222222...45567899 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRp....egppslRiTgvgspesgskeeleetgerLakfAee 171 e++P++kf+h+taNqaIlea++ + vH++Df++++G+QW +L+ La R ++pp + + v+ + + ++ ++ L++fAe+ KN538709.1_FGP039 251 ELTPFVKFAHFTANQAILEATADDLDVHVVDFNVGEGVQWSSLMSDLAaaGRHrsssSKPPLFHLMDVVITSGAGTPRTADARRWLSEFAES 342 *******************************************9553445577889**999977779************* PP GRAS 172 lgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse...... 251 l++pf+++ l++++ ++l+ e + + ++ + ++ +++l+s + +L ++ l+Pk+v+++e e+++ +++ KN538709.1_FGP039 343 LHLPFRYTSLHVHDGDELHHELAMICNgsssSSPVILTCDDTTTTTT--NTPLRSrLKLLLLGTITILQPKLVILIEDELSRiSKSppppsl 432 *************966555554444434555555555555554..4455552366789*************999555599** PP GRAS 252 ..sFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +F e f++a+ +++a+++s+++ + + + + + vE+e++g++++++v g+ + +++ + G+++ ++s + ++q k+ KN538709.1_FGP039 433 apPFPEFFSDAVAHFTAVMESTASCFTSYDeeAWLRRVEEEVVGPRVEDAVRRYGSL--------AGGAQKM-MEGLRAREVSGFSVAQGKM 515 9*****************98887766335568899999999999999999987........2333344.45************* PP GRAS 340 llrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373 l ++ g+ v +e+g l l+Wk+rpL+svS W KN538709.1_FGP039 516 LAGLFG-GGFGVVhQEKGRLALCWKSRPLISVSLW 549 **.67876638899999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.643	143	530	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-49	171	549	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
METMSYPCSP LIPFSTQFEE ISSSSFLLWS PQAEDNPHEN AIMYGFDGDH SHDQIRQDHE 60 FLDMMVIQES ANEFDGDHSH DQIRQDHEFL DMMVIQESAN GFDGDHSHDQ IHQDHEFLEM 120 MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAMAGR ENGNFEESAG DLLLAGAMAV 180 DAGDAVHASA IMSRLDDLLA DIAGRRSCEA TSPVVDHLAY YFARGLKLRI SGAATPASSL 240 PPSPAYRMLQ ELTPFVKFAH FTANQAILEA TADDLDVHVV DFNVGEGVQW SSLMSDLAAA 300 GRHRSSSSKP PLFHLMDVVI TSGAGTPRTA DARRWLSEFA ESLHLPFRYT SLHVHDGDEL 360 HHELAMICNG SSSSSPVILT CDDTTTTTTN TPLRSRLKLL LLGTITILQP KLVILIEDEL 420 SRISKSPPPP SLAPPFPEFF SDAVAHFTAV MESTASCFTS YDEEAWLRRV EEEVVGPRVE 480 DAVRRYGSLA GGAQKMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE KGRLALCWKS 540 RPLISVSLWC PKNKV

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

METMSYPCSP LIPFSTQFEE ISSSSFLLWS PQAEDNPHEN AIMYGFDGDH SHDQIRQDHE  60
FLDMMVIQES ANEFDGDHSH DQIRQDHEFL DMMVIQESAN GFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAMAGR ENGNFEESAG DLLLAGAMAV  180
DAGDAVHASA IMSRLDDLLA DIAGRRSCEA TSPVVDHLAY YFARGLKLRI SGAATPASSL  240
PPSPAYRMLQ ELTPFVKFAH FTANQAILEA TADDLDVHVV DFNVGEGVQW SSLMSDLAAA  300
GRHRSSSSKP PLFHLMDVVI TSGAGTPRTA DARRWLSEFA ESLHLPFRYT SLHVHDGDEL  360
HHELAMICNG SSSSSPVILT CDDTTTTTTN TPLRSRLKLL LLGTITILQP KLVILIEDEL  420
SRISKSPPPP SLAPPFPEFF SDAVAHFTAV MESTASCFTS YDEEAWLRRV EEEVVGPRVE  480
DAVRRYGSLA GGAQKMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE KGRLALCWKS  540
RPLISVSLWC PKNKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-22	196	553	39	382	Protein SCARECROW
5b3h_A	5e-22	196	553	38	381	Protein SCARECROW
5b3h_D	5e-22	196	553	38	381	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538709.1_FGP039

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809511.1	1e-144	nodulation-signaling pathway 2 protein-like isoform X2
TrEMBL	A0A0E0BPD4	0.0	A0A0E0BPD4_9ORYZ; Uncharacterized protein
STRING	OGLUM12G04490.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17114	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-14	GRAS family protein