PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538705.1_FGP055
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 523aa    MW: 59609.2 Da    PI: 8.604
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538705.1_FGP055genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.11.9e-072070755
                AP2  7 rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       r ++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  KN538705.1_FGP055 20 RMHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWG 70
                       6799***********77779888877777999999**************98 PP
2AP247.64e-15113164155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +g+W+A+I   +   g +k+ +lg++ t eeAa a++ a+ + +g
  KN538705.1_FGP055 113 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 164
                        89****99**********99966...3.6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.7911578IPR001471AP2/ERF domain
PfamPF008472.3E-42070IPR001471AP2/ERF domain
SMARTSM003801.3E-132084IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-112080IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-82279IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-17113174IPR016177DNA-binding domain
PfamPF008479.2E-10113163IPR001471AP2/ERF domain
CDDcd000181.25E-23113174No hitNo description
Gene3DG3DSA:3.30.730.104.3E-17114172IPR001471AP2/ERF domain
SMARTSM003803.8E-25114178IPR001471AP2/ERF domain
PROSITE profilePS5103217.728114172IPR001471AP2/ERF domain
Gene3DG3DSA:2.170.270.102.0E-49366517No hitNo description
PROSITE profilePS5028015.244373495IPR001214SET domain
SMARTSM003176.2E-32379501IPR001214SET domain
SuperFamilySSF821993.92E-45384515No hitNo description
PfamPF008564.6E-17389494IPR001214SET domain
PROSITE profilePS508689.183502518IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGGAVNEMKR TAEVAVRDER MHRWTGRFEA HLWDKNTWNE SQSKKGRQGA YDGEEAAARA  60
YDLAALKYWG QGTVLNFPLS TYDEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR  120
HHHNGKWEAR IGRVFGNKYL YLGTYATQEE AAVAYDIAAI EHRGLNAVTN FDINLYIRCR  180
RHRVRVVPWV KPPVARKPKD PAKPPRPSIE ALAAEWAKEK AASGAPEEEC VLPFLQKGAP  240
KKLDIVKVLG LDGFGYMDTV ILSLKSYRKN IPITVGNFVI VMQSCIRLVL KKVMDAVLDM  300
MQVQQMEAFR RLPLPHTFQE FNIDPIKKEE LDNGTEPPPY KIKIIPTGLY WLAALGLVTA  360
QMSALTNHFA DRKRLRSLSG ILLQTQYCGW GSRALEAIEK DDFVIEFVGE VIDDETCEER  420
LEDMRRRGDK NFYMCKVKKD FVIDATFKGN DCRFFNHSCE PNCQLQKWQV NGKTRLGVFA  480
SKAIEVGEPL TYDYRFEQHY GPEIECFCGA QNCQGNMSVS GKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fmu_A1e-33365515106254Histone-lysine N-methyltransferase SETD2
4h12_A1e-33365515106254Histone-lysine N-methyltransferase SETD2
5jjy_A1e-33365515107255Histone-lysine N-methyltransferase SETD2
5jlb_A1e-33365515107255Histone-lysine N-methyltransferase SETD2
5jle_A1e-33365515107255Histone-lysine N-methyltransferase SETD2
5lss_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lsx_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lsy_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lsz_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lt6_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lt6_B2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lt7_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5lt8_A2e-33365515123271Histone-lysine N-methyltransferase SETD2
5v21_A2e-33365515125273Histone-lysine N-methyltransferase SETD2
5v22_A2e-33365515125273Histone-lysine N-methyltransferase SETD2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538705.1_FGP055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067690.0AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence.
GenBankHQ8588200.0HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875646.11e-153histone-lysine N-methyltransferase ASHR3 isoform X2
TrEMBLA0A0E0QJM10.0A0A0E0QJM1_ORYRU; Histone-lysine N-methyltransferase
STRINGORUFI08G18180.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-80AP2 family protein