PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538700.1_FGP051
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 433aa    MW: 47602.3 Da    PI: 8.5786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538700.1_FGP051genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-102954227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       +++ C +++rtG C++G +C+F+H++
  KN538700.1_FGP051 29 GEPDCTYYLRTGLCRFGMSCRFNHPQ 54
                       6899********************97 PP
2zf-CCCH391.4e-127499227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       ++++C+++++tGtCk+G++CkF+H++
  KN538700.1_FGP051 74 GQPECQYYLKTGTCKFGPTCKFHHPR 99
                       5799********************96 PP
3zf-CCCH37.25e-12121145327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG+CkyG++CkF+H++
  KN538700.1_FGP051 121 EKECAYYLKTGQCKYGNTCKFHHPE 145
                        679********************96 PP
4zf-CCCH39.31.1e-12282307227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Ck+G+ CkF+H++
  KN538700.1_FGP051 282 DQPECQYYMKTGDCKFGAVCKFHHPR 307
                        689*********************96 PP
5zf-CCCH41.81.7e-13327352126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++elC+f++r+G+Ck+G++CkF H+
  KN538700.1_FGP051 327 PGEELCKFYSRYGICKFGANCKFDHP 352
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3522755IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-52754IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-82954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-43354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.98672100IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-57299IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-107499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-675101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-578100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868118146IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5118145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6119145IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9121145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5124144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023280308IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5280307IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4286306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413326354IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7326353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6328353IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLVAEGMWQQ MTMSGSGAMQ PGPYPERSGE PDCTYYLRTG LCRFGMSCRF NHPQDRNLAI  60
ASARMKGEYP ERMGQPECQY YLKTGTCKFG PTCKFHHPRE KAGIAGRVQL NTLGYPLRPS  120
EKECAYYLKT GQCKYGNTCK FHHPELFNAM ASSRGSPIYP SVHSSATAGP PSYTGTMASW  180
AFPRGSFIPS PRWQNPSNYA PMIVPQGLVQ VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY  240
GTSQQVDASA GNQGMLSPYR SSSYPVPQYA LQRENVFPER PDQPECQYYM KTGDCKFGAV  300
CKFHHPRVRS MPTPDCILSP VGLPLRPGEE LCKFYSRYGI CKFGANCKFD HPTMAPPMGV  360
YAYGSASTNV PMPALHCGVV SFQMCIHVRL QGSLARSAIG FIPQIVGIGP VDLDSKDPAD  420
SPGAPPNTHV LVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538700.1_FGP051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D9YJ740.0A0A0D9YJ74_9ORYZ; Uncharacterized protein
STRINGOGLUM01G46010.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]