PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538695.1_FGP008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 34248.8 Da PI: 5.4315 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.2e-56 | 22 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdee+v++yL++k++++++++ vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+ KN538695.1_FGP008 22 LPPGFRFHPTDEEVVTHYLTRKAQDRSFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEI 112 79**************************99.78***************99999*************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g lvg+kktLvfy grap+gekt Wvmheyrl KN538695.1_FGP008 113 FRGRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRL 148 **9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-63 | 19 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 22 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-29 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSESEVSVIN HQEEEEETRL ELPPGFRFHP TDEEVVTHYL TRKAQDRSFS CVVIADVNLN 60 NCEPWDLPSK AKMGEKEWFF FCHKDRKYPT GMRTNRATAS GYWKATGKDK EIFRGRGLLV 120 GMKKTLVFYM GRAPRGEKTP WVMHEYRLDG KLPPNLPRSA KEEWAVCRVF NKDLAAKIAQ 180 MPPPPFPRND SFPLLDLDLD DFLHLDADLP PLIDDPFAST STLKTEPPPP ANLMHNHYGY 240 FSLPASAAPA TNGAMADQAI RRFCKAEAST ACFSGADADV DPVVDELLSF PDSITDYSYI 300 WKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 7 | 177 | 2 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 7 | 177 | 2 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 7 | 177 | 2 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 7 | 177 | 2 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 12 | 177 | 10 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-55 | 7 | 177 | 2 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 7 | 177 | 2 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538695.1_FGP008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073876 | 0.0 | AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence. | |||
GenBank | AK105645 | 0.0 | AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence. | |||
GenBank | CT841573 | 0.0 | CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence. | |||
GenBank | CU405564 | 0.0 | CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence. | |||
GenBank | JN185444 | 0.0 | JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647863.1 | 0.0 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 2e-87 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0E0EGB2 | 0.0 | A0A0E0EGB2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G23780.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 5e-84 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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