PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538695.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 19545.2 Da PI: 9.8242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL+ ++++ ++++ +i++vdiyk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ KN538695.1_FGP006 12 LPPGFRFHPTDEELILHYLRSRATAGQCPV-PIIADVDIYKFDPWDLPSKAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 102 79****************************.88***************77667899************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl KN538695.1_FGP006 103 HDSaTGESVGVKKALVFYRGRPPKGTKTSWIMHEYRL 139 *9988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-61 | 3 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 12 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-28 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEMTMSSAAT SLPPGFRFHP TDEELILHYL RSRATAGQCP VPIIADVDIY KFDPWDLPSK 60 AVYGESEWYF FSPRDRKYPN GIRPNRAAGS GYWKATGTDK PIHDSATGES VGVKKALVFY 120 RGRPPKGTKT SWIMHEYRLA ADPLAAAANT YKPSSSSRFR NVSMRSIIII PREE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-66 | 6 | 139 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538695.1_FGP006 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT829369 | 0.0 | CT829369.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056N06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647490.1 | 1e-119 | NAC transcription factor 29 | ||||
Swissprot | Q8H4S4 | 1e-71 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0E0QCV3 | 1e-117 | A0A0E0QCV3_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1QDA4 | 1e-117 | I1QDA4_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI07G27590.1 | 1e-118 | (Oryza rufipogon) | ||||
STRING | ORGLA07G0209600.1 | 1e-118 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-71 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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