PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538691.1_FGP089
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 376aa    MW: 40346.6 Da    PI: 9.8158
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538691.1_FGP089genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.73.5e-20292354163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+
  KN538691.1_FGP089 292 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 354
                        89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.6E-291100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.8E-14139260No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-15287350No hitNo description
SMARTSM003381.0E-19292356IPR004827Basic-leucine zipper domain
PfamPF001706.8E-18292354IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587294357IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-9295351No hitNo description
CDDcd147021.35E-21297348No hitNo description
PROSITE patternPS000360299314IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGKGEVATRS KSQKSSATQN EQSTPTNPPT AYPDWSQFQA YYNPAGTAPM TPPGFFHPNV  60
APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM LPGSHPYNPY PGQSPNGTVQ  120
TPTSAGGTET DKSGKSKRKT PLKRSKGSLG NLIKKAPAKP SASSSNEGSS HSESGSGSSS  180
EGSSTNSKSG SRTKDGSEHG QGNDASNKGA TAQSSAVEPV QASTGPVVLN PMMPYWVPPP  240
MAGPATGVNM GMDYWGTPTS VPMHNKVIAA PASAPSSNSR DVVLSDPAIQ DERELKRQKR  300
KQSNRESARR SRLRKQAEWE EVANRADLLK QENSSLKEEL KQLQEKCNSL TSENTTLHEK  360
LKELEGEKSN GNWYKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRLRK
2308315RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538691.1_FGP089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665630.0AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632857.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632859.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632860.10.0bZIP transcription factor 16 isoform X1
RefseqXP_015632861.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879940.10.0bZIP transcription factor 16 isoform X1
RefseqXP_025879941.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-79BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D3FG050.0A0A0D3FG05_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GBH90.0A0A0E0GBH9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NS760.0A0A0E0NS76_ORYRU; Uncharacterized protein
TrEMBLA2XED40.0A2XED4_ORYSI; Uncharacterized protein
TrEMBLI1P9B20.0I1P9B2_ORYGL; Uncharacterized protein
TrEMBLQ10PC30.0Q10PC3_ORYSJ; Os03g0239400 protein
STRINGORUFI03G10140.10.0(Oryza rufipogon)
STRINGOS03T0239400-010.0(Oryza sativa)
STRINGONIVA02G31320.10.0(Oryza nivara)
STRINGONIVA03G10450.10.0(Oryza nivara)
STRINGORGLA03G0095800.10.0(Oryza glaberrima)
STRINGOBART03G09980.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-57basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]