PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538688.1_FGP195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 184aa MW: 19901.2 Da PI: 4.2648 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 97.1 | 2.6e-30 | 92 | 157 | 86 | 149 |
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgs 149 ++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+ ++p+lRiT+ + KN538688.1_FGP195 92 DMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITAHID 157 79*************************************************666789*****9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.866 | 1 | 184 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.1E-28 | 92 | 157 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGG 60 HDLHGLIESM LCDDTLVGVD DGGQAGLHHA DDMSPYMKFG HFTANQAILE AVSGDRRVHI 120 VDYDIAEGIQ WASLMQAMTS RADGVPAPHL RITAHIDFVK RKLPWIQPNY LTHVGMNLIN 180 GYKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-16 | 91 | 153 | 84 | 145 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538688.1_FGP195 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135206 | 1e-138 | AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence. | |||
GenBank | AP014959 | 1e-138 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630025.1 | 5e-46 | nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A0D3FGJ0 | 3e-45 | A0A0D3FGJ0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CYD9 | 1e-44 | A0A0E0CYD9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1P9R4 | 1e-44 | I1P9R4_ORYGL; Uncharacterized protein | ||||
STRING | OMERI03G10770.1 | 2e-45 | (Oryza meridionalis) | ||||
STRING | ORGLA03G0111000.1 | 2e-45 | (Oryza glaberrima) | ||||
STRING | OBART03G11490.1 | 4e-46 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7580 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-24 | GRAS family protein |