PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP142
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 304aa    MW: 33766.8 Da    PI: 4.9723
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP142genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.62.7e-1361001898
              NF-YC  18 nhelPlarikkilkadedvkmisaeaPvll..............skacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                        ++++P  rikki++adedv +i+  +Pvl+              +ka elf+ +l  r++  + +   +t+  s +++++ + +++dfl d+
  KN538687.1_FGP142   6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVcfhftyisllsivaAKALELFLQDLCNRTYDITVQRGVKTVSSSHLKQCIHSYNVYDFLRDV 97 
                        5789***********************974334444444444447*********************************************** PP

              NF-YC  96 vpr 98 
                        v +
  KN538687.1_FGP142  98 VSK 100
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-22386IPR009072Histone-fold
SuperFamilySSF471135.51E-154102IPR009072Histone-fold
PfamPF008086.3E-5835IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PfamPF008083.5E-64885IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVCFHFT YISLLSIVAA KALELFLQDL  60
CNRTYDITVQ RGVKTVSSSH LKQCIHSYNV YDFLRDVVSK VPDMGTSDAG VDDKLGKRRK  120
TAEDDSEEES KRTRNEAASQ TSTGRGRGRG RGRGRRGGRV SEREIISAYE KFEENHEFPP  180
GQFSKPSQLK VDVSVDGTDA IETKEATPLS NARASLRNID LNIELTDYDD EGSAPLEVQP  240
PAPAAGVVTT SSGPLVSEVN EEAKTKDFLG WQLPELTKMA MDPVQFALSS NHRLDEDEDY  300
DNEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A5e-16285574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144153RGRGRGRGRG
2144154RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880480.0AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds.
GenBankAK0683200.0AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639312.10.0dr1-associated corepressor
TrEMBLA0A0E0HGA60.0A0A0E0HGA6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PPD40.0A0A0E0PPD4_ORYRU; Uncharacterized protein
TrEMBLA2Y6270.0A2Y627_ORYSI; Uncharacterized protein
TrEMBLQ65X800.0Q65X80_ORYSJ; Os05g0494100 protein
STRINGORUFI05G22600.10.0(Oryza rufipogon)
STRINGOS05T0494100-010.0(Oryza sativa)
STRINGONIVA05G22040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-50nuclear factor Y, subunit C11