PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538684.1_FGP061
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 891aa    MW: 100620 Da    PI: 7.987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538684.1_FGP061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05582604123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg sF  + +Lk+H+++H
  KN538684.1_FGP061 582 HTCQECGASFQKPAHLKQHMQSH 604
                        79*******************99 PP
2zf-C2H220.61.2e-06610634123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp  dC+ s+ rk++L+rH+ +H
  KN538684.1_FGP061 610 FICPleDCPFSYIRKDHLNRHMLKH 634
                        78*********************99 PP
3zf-C2H214.10.00013639664123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+   Cg+ Fs k n++rH +  H
  KN538684.1_FGP061 639 FTCSmdGCGRKFSIKANMQRHVKEiH 664
                        89********************9988 PP
4zf-C2H214.40.00011676700123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+k+F+  s +k+H  +H
  KN538684.1_FGP061 676 FVCKeeGCNKVFKYASKMKKHEESH 700
                        89*******************9988 PP
5zf-C2H216.52.5e-05767791223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C  sFs+ksnL++Hi+  H
  KN538684.1_FGP061 767 KCSfeGCECSFSNKSNLTKHIKAsH 791
                        688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.70391125IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.7E-895125IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.102.7E-8160207IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.701161195IPR002885Pentatricopeptide repeat
PfamPF015351.2E-4163190IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4163191IPR002885Pentatricopeptide repeat
PfamPF015350.086194221IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.063223257IPR002885Pentatricopeptide repeat
PfamPF015358.3E-5225254IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-4225258IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903293323IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.7E-8296355IPR011990Tetratricopeptide-like helical domain
PfamPF015350.03298322IPR002885Pentatricopeptide repeat
PfamPF130411.3E-10323371IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641324358IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.8E-6326359IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219359389IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001361388IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774395425IPR002885Pentatricopeptide repeat
PfamPF015350.044398422IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.7E-8425491IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.579427457IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.87461495IPR002885Pentatricopeptide repeat
PfamPF015350.56470492IPR002885Pentatricopeptide repeat
SMARTSM0035524536558IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5579601IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017582604IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547582609IPR007087Zinc finger, C2H2
PROSITE patternPS000280584604IPR007087Zinc finger, C2H2
SuperFamilySSF576678.94E-11594636No hitNo description
Gene3DG3DSA:3.30.160.601.6E-11602636IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808610639IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4610634IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280612634IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-8620668No hitNo description
Gene3DG3DSA:3.30.160.603.0E-7637666IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.341639669IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4639664IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280641664IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-7673700IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.764676700IPR007087Zinc finger, C2H2
SMARTSM003550.0038676700IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280678700IPR007087Zinc finger, C2H2
SMARTSM003555.7708733IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280710733IPR007087Zinc finger, C2H2
SMARTSM0035515736757IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5748788IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-7749803No hitNo description
PROSITE profilePS5015711.365766796IPR007087Zinc finger, C2H2
SMARTSM003550.002766791IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280768791IPR007087Zinc finger, C2H2
SMARTSM003555.8797823IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280799823IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MPKTDAYLGV RSRALRRASC VEERGMNRSV CHHLLTQCKT IRELQRIHAQ ALTHGLHPNQ  60
QSISCKIFRS YAEFGRPADA GRLFDEIPHP DIISFTSLMS LHLKLDHHRK AISVFSHAIA  120
SGHRPDGFAA VGALSASGGL GDHRIGSAVH GLIFRCGLDS ELVVCNALVD MYCRCGKFEP  180
ARTVFDRMLV KDEVTWGSML YGYMKCVGVD SALSFFYQMP MKSTVSWTAL ITGHVQDKQP  240
IQALELFGKM LLEGHRPTHI TIVGVLSACA DIGALDLGRA IHGYGSKSNA TTNIIVTNAL  300
MDMYAKSGSI ASAFSVFEEV QMKDAFTWTT MISSFTVQGN GRKAVELFWD MLRSGILPNS  360
VTFVSVLSAC SHAGLIQEGR ELFDKMREVY HIDPRLEHYG CMVDLLGRGG LLEEAEALID  420
HMDVEPDIVI WRSLLSACLA HGNDRLAEIA GKEIIKREPG DDGVYVLLWN MYASSNRWKE  480
ALDMRKQMLS KKIYKKPGCS WIEVDGVVHE FLMCSGDDID GDTRVEATQH RDIRRYKCEF  540
CTVVRSKKCL IRAHMVAHHK EELDKSEIYK SNGEKVVHEG DHTCQECGAS FQKPAHLKQH  600
MQSHSDERSF ICPLEDCPFS YIRKDHLNRH MLKHQGKLFT CSMDGCGRKF SIKANMQRHV  660
KEIHEDENAT KSNRQFVCKE EGCNKVFKYA SKMKKHEESH VKLDYVEVVC CEPGCMKTFT  720
NVECLRAHNQ ACHQYVQCDI CGEKHLKKNI KRHLRAHEEV PSTERIKCSF EGCECSFSNK  780
SNLTKHIKAS HDQVKPFACR FTGCEKVFPY KHVRDNHEKS SAHVYTQANF TEMDEQLLSC  840
PRGGRKRKAV TVETLTRKRV TMHGDASSLD NGTEYLRWLL SGGDDDSSQT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D7e-574549310333PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538684.1_FGP061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0D3EZT20.0A0A0D3EZT2_9ORYZ; Uncharacterized protein
STRINGOBART02G01180.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-117transcription factor IIIA