PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538682.1_FGP062
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 321aa    MW: 34327.7 Da    PI: 7.3174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538682.1_FGP062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.6e-134286347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +W++eE+++++ +  +lG+g+W+ I+r     Rt+ q+ s+ qky
  KN538682.1_FGP062 42 AWSEEEHKKFLLGLSKLGKGDWRGISRNYVGSRTPTQVASHAQKY 86
                       7**************************9988*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0493591IPR017930Myb domain
SuperFamilySSF466893.82E-163792IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-173890IPR006447Myb domain, plants
SMARTSM007177.5E-103989IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-94185IPR009057Homeodomain-like
CDDcd001671.65E-94287No hitNo description
PfamPF002499.5E-114286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MRKSASMGSL AQMAEGSGGG GGREEGYGSD GNDDKRRKRG EAWSEEEHKK FLLGLSKLGK  60
GDWRGISRNY VGSRTPTQVA SHAQKYFIRQ TNVHRRKRRS SLFDMVIDDS DDQPLSRTSS  120
QEVEVEENLE DGHPVTAPVI PPAPVPMLSS SLVPPPVPAM APVAPGPVLT SASATLPVSA  180
VAPQTDEKEQ VASGSNTTET GAAIPEVMPP YGYPMMLPPY YPPAFVPMPY YGYVPVFYAP  240
PGAVQAQHEV VKPVAVHSKP PVHIDELYSM SELSLKGEAS VKNGTPNSPL PPRPIGRPDR  300
QSAFHGKGPS DGSSNGLIPA K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538682.1_FGP062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736810.0AK073681.1 Oryza sativa Japonica Group cDNA clone:J033054K18, full insert sequence.
GenBankEU8372520.0EU837252.1 Oryza sativa Japonica Group clone KCB704E08 myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651035.10.0transcription factor MYBS3-like
TrEMBLA0A0E0AQR30.0A0A0E0AQR3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I7710.0A0A0E0I771_ORYNI; Uncharacterized protein
TrEMBLA2YR580.0A2YR58_ORYSI; Uncharacterized protein
STRINGOGLUM08G02800.10.0(Oryza glumipatula)
STRINGONIVA08G02810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-29MYB_related family protein