PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538681.1_FGP267 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 128aa MW: 13937.6 Da PI: 8.8439 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 45.4 | 1.3e-14 | 7 | 32 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg KN538681.1_FGP267 7 WKTRICNKWEMTGYCPFGSKCHFAHG 32 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-17 | 2 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-11 | 2 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-11 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MQKPSNWKTR ICNKWEMTGY CPFGSKCHFA HGAAELHKYG GGLVDIDSRD AAATPDSKQA 60 TVSAKAPAET AAASTAVPPH ADVYHLGVQA QRSTIAGQRS GQVQRPIQKW KGPDKISRIY 120 GDWIDETE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538681.1_FGP267 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004635 | 1e-141 | AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01. | |||
GenBank | AP004698 | 1e-141 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 1e-141 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-141 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648128.1 | 1e-78 | zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_015648129.1 | 1e-78 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 9e-80 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A0E0EI69 | 6e-86 | A0A0E0EI69_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G03640.1 | 1e-86 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 7e-42 | C3H family protein |