PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538681.1_FGP110
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 753aa    MW: 82422.8 Da    PI: 5.9782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538681.1_FGP110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-072450128
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                       r rWT+ E+ ++++a k++G   W +I 
  KN538681.1_FGP110 24 RERWTEAEHNRFLEALKLYGRA-WQRIE 50
                       78******************88.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-51849IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-42451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MEINSSGEEA VVKVRKPYTI TKQRERWTEA EHNRFLEALK LYGRAWQRIE GLIARSMNGE  60
EHKQGRHNPL EKEAINNGTS PGQAHDIDIP PPRPKRKPNS PYPRKSCLSS ETSTREVQND  120
KATISNMTNN STAQMEGDAA LEKLTYIQKL QRKEISEKGS CSEVLNLFRE VPSASFSSVN  180
KSSSNHGASR GLEPTKTEVK DVVILERDSI SNGAGKDAKD INDQEMERLN GIHISSKPDH  240
SHENCLDTSS QQFKPKSNSV ETTYVDWSAA KASHYQMDRN GVTGFQATGT EGSHPDQTSD  300
QMGGASGTMN QCIHPTLPVD PKFDGNAAAQ PFPHNYAAFA PMMQCHCNQD AYRSFANMSS  360
TFSSMLVSTL LSNPAIHAAA RLAASYWPTV DGNTPDPNQE NLSESAQGSH AGSPPNMASI  420
VAATVAAASA WWATQGLLPL FPPPIAFPFV PAPSAPFSTA DVQRAQEKDI DCSMDNAQKE  480
LQDTRKQDNS EAMKVIVSSE TDESGKGEVS LHTELKISPA DKADTKPAAG AETSDVFGNK  540
KKQDRSSCGS NTPSSSDIEA DNAPENQEKA NDKAKQASCS NSSAGDNNHR RFRSSASTSD  600
SWKEVSEEVV VYQHSAYSHL SYSLNIHHCF SNSHFCCQGR LAFDALFSRE RLPQSFSPPQ  660
VEGSKEISKE EEDEVTTVTV DLNKNAAIID QELDTADEPR ASFPNELSNL KLKSRRTGFK  720
PYKRCSVEAK ENRVPASDEV GTKRIRLESE AST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538681.1_FGP110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044600.0AP004460.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0438H08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649835.10.0protein LHY isoform X1
RefseqXP_015649836.10.0protein LHY isoform X1
RefseqXP_015649837.10.0protein LHY isoform X1
RefseqXP_025875636.10.0protein LHY isoform X1
RefseqXP_025875637.10.0protein LHY isoform X1
RefseqXP_025875638.10.0protein LHY isoform X1
RefseqXP_025875639.10.0protein LHY isoform X1
TrEMBLA0A0E0QEK10.0A0A0E0QEK1_ORYRU; Uncharacterized protein
STRINGORUFI08G03840.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.14e-29circadian clock associated 1