PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G21360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 373aa    MW: 41116.8 Da    PI: 8.1111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G21360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.41.8e-46371892128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekew.yfFskrdkkyatgkrknr 76 
                       pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk                  +++a eke+ yfF+ r +ky+++ r+nr
  OGLUM12G21360.1  37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgsssssslsTAAAAEKECgYFFCLRGRKYRNSIRPNR 129
                      69***************************.99***************7789***9999999888764445677888****************** PP

              NAM  77 atksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +t sg+Wkatg dk+++s+         g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  OGLUM12G21360.1 130 VTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 189
                      ******************8777666655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.24236214IPR003441NAC domain
SuperFamilySSF1019416.8E-4836214IPR003441NAC domain
PfamPF023656.1E-2338189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEGEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK  60
KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSL STAAAAEKEC GYFFCLRGRK  120
YRNSIRPNRV TGSGFWKATG IDKPIYSSSL AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT  180
DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAASMN KRISHQLQHI  240
HHHQQQFYYH EVVHDHGHHH RRHLQHYAGS ASMAAAAANI VDVIDHSSDA ETTTRSHSHS  300
QSHLVADIRH RQSPFMLDFH AGTAVSSSST AAAGWSEVMS FSRDGGSSSG SSWDELGRIM  360
DISTNSANNN YYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-433821419165NO APICAL MERISTEM PROTEIN
1ut4_B1e-433821419165NO APICAL MERISTEM PROTEIN
1ut7_A1e-433821419165NO APICAL MERISTEM PROTEIN
1ut7_B1e-433821419165NO APICAL MERISTEM PROTEIN
4dul_A1e-433821419165NAC domain-containing protein 19
4dul_B1e-433821419165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619497.10.0NAC domain-containing protein 41 isoform X2
TrEMBLA0A0E0BVJ80.0A0A0E0BVJ8_9ORYZ; Uncharacterized protein
STRINGOGLUM12G21360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-74NAC domain containing protein 42