PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G19880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 734aa MW: 78740 Da PI: 6.7558 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.2 | 1e-15 | 461 | 500 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OGLUM12G19880.1 461 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 500 689**********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.9E-15 | 460 | 501 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 17.685 | 461 | 553 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.8E-12 | 463 | 498 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MDTPDRPPRA AAAAAAAATA AVEDSPVFNF INSLSPIPPP KPSDSAHNVQ LFKSSDLAPV 60 SSIFASPHVN PAKESKLPIR EDSVQLSRES HSPNSVRTRT GATSSIIRMI RCKNIVSENC 120 SITCYLNDST SSKASQPIQL CGGSAESDTN QNTDGKKDPT TEQDRTDIEF VLLDQCGPEK 180 MDSSQSGNNA CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE TQLVNETLQT 240 DNVYCETLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ SQLVPNDQIN 300 NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNSSARHST NSTTPRRKIS 360 SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV PSAVGSSPPT 420 DDPHTINDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGS SCKRCSCKKS KCLKLYCECF 480 HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG QELAGGVGCS 540 VSCRCEGCKN AFGRREGVAL LGIEEAKRGC EEKDGGVKEE TTDNDKQLVI YQDSINLTPA 600 ESVLATPSVV DYRPLVALPP LSSKKPRSST KLGGYSSRLE GHLKSDILLS PFESYAEMML 660 GDGTSNVLKG ESSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK SIPSFPSLGG 720 DITNEDPNTS SLAP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073942 | 0.0 | AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620275.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0E0BUZ1 | 0.0 | A0A0E0BUZ1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G19880.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-52 | Tesmin/TSO1-like CXC domain-containing protein |