PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G10680.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 560aa    MW: 59809.8 Da    PI: 8.6843
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G10680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-211966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+nk +rqvtf+kRr g++KKA+EL  L++a vav++fs+  ++y +
  OGLUM12G10680.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSPAKHVYAF 66
                     8*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.6091070IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-301069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-251084IPR002100Transcription factor, MADS-box
CDDcd002659.47E-291186No hitNo description
PRINTSPR004045.1E-171232IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221966IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-173247IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-174768IPR002100Transcription factor, MADS-box
SMARTSM013264.7E-8181390IPR014020Tensin phosphatase, C2 domain
PROSITE profilePS5118212.535248391IPR014020Tensin phosphatase, C2 domain
Gene3DG3DSA:2.60.40.11101.1E-4333389No hitNo description
SuperFamilySSF495625.56E-6334388IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSPA  60
KHVYAFGHPS VDAVLRSYAS VPGEAAAVAP VPVHGSSGGE DVDLLGLRLA ADDTGAQVAA  120
EHARMRDVAA RIVQAKAGRW FWWEAHVDAL GEAELPEFVT ALKKLRDNVG RHANALLAPQ  180
PPPLPLQQKQ RRRRSPSGPG CPPLAATPRA APNSCRQVTA TSRSSAVRRS SKTYTIPSAS  240
TPAHKTSRSS AVRRSSKTYT IPSASTPAHK ISGCCHSPEE DHDPLSLLAL LGSWLSLLVL  300
LGSWAVQPED FWFSAPKKGI MVFALPGEPG LTEVAGDFKI QFHDRQGDFY CWLNTTMMEN  360
RVTLNPTDLD DFDKRKLPSP GFQVEVVLVD YDGSQPPKPK PAAASTDQKS EADSSTGTVA  420
KGNNASSAEV SNKESARNDK DDVFSDSEAE DGSSKGRREK VSRNVEGTTN AAKASETSSV  480
QKEASASASR IEKVSITSEQ GSARTPDAAP LKSGVSSKSS STTAPPPPPA AADSSMSEFK  540
AIAADASVFS FGDEDDYESE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0622130.0AK062213.1 Oryza sativa Japonica Group cDNA clone:001-047-A07, full insert sequence.
GenBankAK1003200.0AK100320.1 Oryza sativa Japonica Group cDNA clone:J023079D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BRQ00.0A0A0E0BRQ0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G10680.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-26AGAMOUS-like 61