PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G07910.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 450aa    MW: 47685.5 Da    PI: 6.0477
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G07910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.99.8e-24364414252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      +k+++l  ++ yF+lpi++AAk+L++c+T+LK iCR++G+ RWP+Rk++s+
  OGLUM12G07910.1 364 TKQLQLGGIAPYFELPIAKAAKKLDICATALKGICRKHGVLRWPYRKVRSI 414
                      799*********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.449354436IPR003035RWP-RK domain
PfamPF020421.6E-19367414IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAGDGGNGAA DGGGEHLELD FFPSPLLDNF DVLELLDLSV LGDVDDDGAP PAPAPVQLSV  60
DGAGGGRINK PGSSVDDLVD WSTAFGNNCS KIDGEYGGAS TSSFAAPAPA PPQEDYCSGC  120
QVLREVVHSN GLEITKLCIH GGVASGEFYH AILDVYRVSA SAPAPALAHH SIIKGRGYDW  180
VKQYLTEYAL RRAGGGFAVV QDSLSAFHDA LCTTMAPCSS HVGDDDAHRR ASSSAAAAAE  240
ERTNGNGDHG QLVVHNAAVL PMLESSRCLV AADQAATTNN NGSGDRRLVV LDTTAIQPPA  300
SGCILHMAFP SKSYQSSRPT TLPSRYQECT CNPVAYEMDG VRSSLAPICW PELLGYNVTN  360
REKTKQLQLG GIAPYFELPI AKAAKKLDIC ATALKGICRK HGVLRWPYRK VRSIDRQIAT  420
LRRSGNGDAT RNEIETLIAS RRRIVAGLDQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318060.0AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9541600.0AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664445.11e-111PREDICTED: uncharacterized protein LOC102713973
TrEMBLA0A0E0BQM70.0A0A0E0BQM7_9ORYZ; Uncharacterized protein
STRINGOGLUM12G07910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-12RWP-RK domain-containing protein