PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04560.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 913aa    MW: 101241 Da    PI: 8.3499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.7e-2590185185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  OGLUM12G04560.1  90 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 183
                      7*********************9877778889999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  OGLUM12G04560.1 184 CM 185
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-1988212No hitNo description
SuperFamilySSF813831.96E-6518570IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.8E-6523570No hitNo description
PfamPF006461.2E-11526579IPR001810F-box domain
SuperFamilySSF545182.09E-97576763IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.20.90.102.5E-92586759IPR000007Tubby, C-terminal
PfamPF011671.8E-93591907IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73643659IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73659683IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73709736IPR000007Tubby, C-terminal
Gene3DG3DSA:3.20.90.102.5E-92804907IPR000007Tubby, C-terminal
SuperFamilySSF545182.09E-97808913IPR025659Tubby C-terminal-like domain
PRINTSPR015731.7E-73814831IPR000007Tubby, C-terminal
PROSITE patternPS012000832845IPR018066Tubby, C-terminal, conserved site
PRINTSPR015731.7E-73832848IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73870889IPR000007Tubby, C-terminal
PRINTSPR015731.7E-73891913IPR000007Tubby, C-terminal
PROSITE patternPS012010898913IPR018066Tubby, C-terminal, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM  60
SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN  120
SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA  180
LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE  240
HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS  300
SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ  360
RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELELGTFS ICFMALYQSS ASSRVPPTLV  420
QPLPLVLSFP SSSSSSSDPH ASSASASLPR RPPLAAAGAT PERGEAEMSF RSIVRDVRDG  480
FGSLSRRGFE VRLVGHRRGR SHSAVHELRD GHAAAAAAAD VVQSSCWANL PPELLRDVIE  540
RLEASEAAWP SRKNVVACAA VCRTWRDMCR EIVKNPEFCG KITFPVSLKQ PGPRDGAIQC  600
FIKRDKSTQT YNLYLCLSSA VLVESGKFLL SAKRYSRATC TEYTIFMSAD NTSRSSNMYI  660
GKLRSNLLGT KFVIYDTQPP CNTANVSQSG KTSRRFYSRK VSPKNPSSTY SIAQVSYELN  720
VLGTRGPRRM NCVMHSIPAS SLEAGGTVPC QPDSVLARSL DESFGSISFS KSSIMDRAIR  780
FSSSRYSDIS VGGPMVGGQA LGDSDESKER PLILRNKAPR WHEQLQCWCL NFKGRVTVAS  840
VKNFQLVAAT QPAAGAPTPS QPAPPPPPDH DKVILQFGKV AKDMFTMDYR YPLSAFQAFA  900
ICLSSFDTKL ACE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fim_A8e-4659091331276Tubby related protein 1
2fim_B8e-4659091331276Tubby related protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470040.0EU847004.1 Oryza sativa Japonica Group clone KCB831C11 TUBBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BPE10.0A0A0E0BPE1_9ORYZ; Tubby-like F-box protein
STRINGOGLUM12G04560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.18e-88sequence-specific DNA binding transcription factors