PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM12G02880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 34552.2 Da PI: 10.33 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.3e-31 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YY+C++ gCp++k+ver+ dp+++++tYegeH+h+ OGLUM12G02880.1 249 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPADPSMLIVTYEGEHRHT 307 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-20 | 197 | 246 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-32 | 236 | 307 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 243 | 309 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-25 | 246 | 307 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-37 | 248 | 308 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-26 | 250 | 306 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA PAQEQHQQVD 60 CREITDMTVS KFKKVISMLN RTGHARFRRG PVVAQSSGPA ASEPAPVRSS PSAVSRPMTL 120 DFTKAASGYG KDAGFSVSGI SAASSSFLSS VTGDGSVSNG RGGGSSSLML PPPPATSCGK 180 PPLSSAAAAM SAGVGHKRKC HDHAHSENVA GGKYGSTGGR CHCSKRRKHR VKRTIRVPAI 240 SSKVADIPAD DFSWRKYGQK PIKGSPFPRG YYKCSTLRGC PARKHVERDP ADPSMLIVTY 300 EGEHRHTPAA TGQEHPPAPP PPLALPLA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 236 | 306 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK100954 | 0.0 | AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633572.1 | 0.0 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q6IEN1 | 0.0 | WRK51_ORYSI; WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A0E0BNP9 | 0.0 | A0A0E0BNP9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G02880.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-90 | WRKY DNA-binding protein 11 |