PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 626aa    MW: 68146.5 Da    PI: 6.845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.26e-22129189359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  OGLUM12G01420.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189
                      9************************9888889**********98776537899*****997 PP
2WRKY54.91.7e-17474528356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OGLUM12G01420.1 474 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 528
                      9**************************99999********987.33322.2344443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-23112190IPR003657WRKY domain
SuperFamilySSF1182906.54E-21120189IPR003657WRKY domain
SMARTSM007742.8E-31127190IPR003657WRKY domain
PfamPF031068.1E-22129189IPR003657WRKY domain
PROSITE profilePS5081119.52129170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-20467542IPR003657WRKY domain
SuperFamilySSF1182901.44E-18468542IPR003657WRKY domain
SMARTSM007741.1E-28472544IPR003657WRKY domain
PROSITE profilePS5081114.584474514IPR003657WRKY domain
PfamPF031066.3E-22474542IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LAGDDECLPP GLTTTTTVSG  60
GGGRRRGRKR IRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKQQTTTST  120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV  180
AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST  240
SSTSSETGNW SGQHGAYACR RQMIAADEEY CCSDTPATTT ASGSDGGNSS TCADQEIDLM  300
SGPIRSPLHI AADGNWVDDL LLVGIKEMKN SSNKRPLVAD QWHPSSVCCD HRAALREIAR  360
GQSLVTQLRA IVLPALHSDE RGDLAAQMLE GILDCSRKAI SELQLQLSSD SPHDDDGHLD  420
DKRRVRKIVS SSSDDDDHCS SKAAEDHNAK PLRQHKRRRF GDSVSLETPV PHYDGHQWRK  480
YGQKHINNSK HPRSYYRCTY RQEEKCKATK TVQQREDLHH ANSYNGDHPV MYTVVYYGQH  540
TCCKGPAASA DDHVVVEASQ ISTDSHCQSP GSSSSELQAA AHAGDSSQCS KISVTCSSSV  600
VVEDCNKLLD MLPAADELTT DVLNQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131295421069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472RRGRKRIRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0BN290.0A0A0E0BN29_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01420.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-16WRKY DNA-binding protein 70