PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01400.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 370aa    MW: 39682.4 Da    PI: 7.9178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.21.6e-18122186259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OGLUM12G01400.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186
                      8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-21107186IPR003657WRKY domain
PROSITE profilePS5081114.665116163IPR003657WRKY domain
SuperFamilySSF1182902.09E-19117186IPR003657WRKY domain
SMARTSM007741.2E-28121187IPR003657WRKY domain
PfamPF031061.4E-21122186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPILPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TNKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCRGDGI ANPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDEKFEN LCMFLVLDVE  240
LLRSAGVRGG GGEGAGGECG TAQQEGGAGA TLRDGATEKD SAREKRAPRP GGTMRVRGGH  300
AWVRRGLPTP DSGAGTADCG PERGVVRKRR DCGVAGDDGR AAAQARWSAS CGAARLGSAL  360
AVRDGAAPGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.11e-173probable WRKY transcription factor 67
TrEMBLA0A0E0BN260.0A0A0E0BN26_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01400.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46