PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G01380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 168aa MW: 18631.7 Da PI: 7.947 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34.4 | 4.2e-11 | 10 | 52 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 ++ YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ OGLUM12G01380.1 10 TKFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 52 577******99999*******8761679*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.07E-10 | 9 | 53 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-13 | 10 | 51 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-8 | 10 | 53 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-10 | 11 | 52 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MQDSAGFGVT KFYYRCTYKN DMKCPATKQV QQKDTNDPPL FSVTYFNHHT CNSSPKIVGS 60 TPDSTVQSRK AISICFNSHG KTGELPTFLS PSASLLSPSM QPYSSNQQPD MNTYSRQFHW 120 ADTSSSTSYA PVKMEADDYA EASASPSTTG ALSRTLLPID YRYFFVVP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000500 | 0.0 | BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620027.1 | 1e-105 | probable WRKY transcription factor 29 isoform X2 | ||||
TrEMBL | A0A0E0BN22 | 1e-121 | A0A0E0BN22_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G01380.1 | 1e-122 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-10 | WRKY DNA-binding protein 46 |