PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G01350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 153aa MW: 17295.2 Da PI: 10.2962 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.3 | 6.4e-08 | 105 | 126 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 dDg++WrKYG K+ +s+fp s OGLUM12G01350.1 105 DDGHQWRKYGEKKLSNSNFPSS 126 8******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-7 | 92 | 125 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-7 | 96 | 126 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.002 | 104 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-5 | 105 | 126 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MRGRRVLTLK NGRLPSLFNG AINKSGQRRA PIPTPSSSSP SSLPSETTRP PQNLPFFSET 60 EMALDSVPSY PSDLGSSRAR TPQQQRVSPR KEERTWTTDT YAPYDDGHQW RKYGEKKLSN 120 SNFPSSGRTA PTHQYLPEWK CIVVYYNPNH VDA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073243 | 1e-148 | AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0BN19 | 1e-108 | A0A0E0BN19_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G01350.1 | 1e-109 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-07 | WRKY DNA-binding protein 55 |